Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.99755 * 2 1 4 4 C 1.38214 * 120.00234 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99405 * 359.76848 * 4 3 2 6 6 C 1.38221 * 120.00310 * 0.46054 * 5 4 3 7 7 C 1.50699 * 119.99940 * 179.79094 * 6 5 4 8 8 C 1.50692 * 113.00246 * 66.23200 * 7 6 5 9 9 H 1.08001 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00270 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99933 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00270 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46904 * 270.00187 * 12 10 8 14 14 H 1.48495 * 109.47191 * 29.99863 * 12 10 8 15 15 H 1.48495 * 109.47387 * 150.00350 * 12 10 8 16 16 C 1.54037 * 113.81488 * 198.05971 * 7 6 5 17 17 O 1.44450 * 85.42669 * 91.80652 * 16 7 6 18 18 C 1.44177 * 93.37952 * 24.08863 * 17 16 7 19 19 C 1.38206 * 120.00067 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47301 * 270.02540 * 1 2 3 21 21 H 1.08998 * 109.47355 * 30.02596 * 1 2 3 22 22 H 1.09004 * 109.46650 * 150.02326 * 1 2 3 23 23 H 1.07998 * 120.00349 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.00618 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.00044 * 180.25298 * 5 4 3 26 26 H 0.97003 * 120.00303 * 179.97438 * 11 10 8 27 27 H 1.08998 * 113.86240 * 205.91301 * 16 7 6 28 28 H 1.09000 * 113.86225 * 337.62025 * 16 7 6 29 29 H 1.09002 * 113.86618 * 221.76694 * 18 17 16 30 30 H 1.09002 * 113.98177 * 90.07409 * 18 17 16 31 31 H 1.07997 * 120.00365 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2716 0.0002 0.0059 6 6 3.5806 -1.1969 0.0011 7 6 4.3342 -2.5019 0.0022 8 6 5.1075 -2.7343 1.2746 9 1 5.0805 -1.9987 2.0649 10 6 5.8493 -3.8860 1.4298 11 7 5.8826 -4.7816 0.4673 12 14 6.8073 -4.1744 3.0073 13 1 8.1735 -3.6095 2.8671 14 1 6.1107 -3.5100 4.1380 15 1 6.8994 -5.6329 3.2710 16 6 3.4868 -3.7098 -0.4401 17 8 3.9781 -3.4215 -1.7675 18 6 5.1548 -2.7474 -1.2781 19 6 2.1980 -1.1969 0.0005 20 1 -0.3634 0.0005 1.0277 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3633 -0.8903 -0.5135 23 1 1.6583 2.1327 -0.0004 24 1 4.1204 2.1328 0.0001 25 1 5.3517 0.0002 0.0105 26 1 6.4048 -5.5918 0.5764 27 1 3.8333 -4.6622 -0.0388 28 1 2.4132 -3.5615 -0.3240 29 1 5.4014 -1.8374 -1.8251 30 1 6.0131 -3.4035 -1.1328 31 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258559411.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = 10.735207 kcal Electronic energy + Delta-G solvation = -14675.895814 eV Core-core repulsion = 12309.463945 eV Total energy + Delta-G solvation = -2366.431868 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.64591 -37.80011 -32.99522 -32.25920 -30.90873 -27.66645 -26.46211 -24.93741 -24.38372 -22.05090 -20.70654 -18.44644 -16.54488 -16.16245 -14.93843 -14.70195 -14.32688 -13.98191 -13.90601 -13.53740 -13.31898 -12.51250 -12.08593 -11.92194 -11.56110 -11.37031 -11.15619 -10.87337 -10.76364 -10.61822 -10.51914 -9.71709 -9.68209 -8.87845 -8.47877 -8.29357 -8.07655 -7.60875 -6.10870 -4.28570 2.02824 2.10966 3.20944 3.28749 3.32517 4.25914 4.47980 5.01757 5.29709 5.32677 5.36673 5.63603 5.70246 5.86391 5.92889 6.07443 6.16365 6.28004 6.32407 6.52004 6.76083 6.79269 6.83373 7.10068 7.15818 7.31522 7.44626 7.52597 7.62210 7.73624 7.78377 7.84714 8.22707 8.76421 9.36783 10.82877 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.009764 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.968133 B = 2866.886862 C = 3144.557282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.011 4.011 7 C 0.034 3.966 8 C -0.498 4.498 9 H 0.060 0.940 10 C 0.062 3.938 11 N -0.882 5.882 12 Si 0.901 3.099 13 H -0.279 1.279 14 H -0.273 1.273 15 H -0.285 1.285 16 C 0.037 3.963 17 O -0.409 6.409 18 C 0.046 3.954 19 C -0.124 4.124 20 H 0.064 0.936 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.265 0.735 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.107 0.893 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 6.919 -0.055 8.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.165 4.165 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.011 4.011 7 C 0.033 3.967 8 C -0.536 4.536 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.520 5.520 12 Si 0.728 3.272 13 H -0.205 1.205 14 H -0.198 1.198 15 H -0.210 1.210 16 C -0.040 4.040 17 O -0.328 6.328 18 C -0.031 4.031 19 C -0.142 4.142 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.127 0.873 24 H 0.130 0.870 25 H 0.137 0.863 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.197 6.677 -0.350 8.469 hybrid contribution 0.655 -0.148 1.000 1.204 sum -4.542 6.529 0.649 7.980 Atomic orbital electron populations 1.20721 0.92053 1.02052 1.01676 1.19795 0.95392 0.93383 1.00927 1.20761 0.94223 0.96748 1.04731 1.21004 0.94177 0.97564 1.01333 1.20970 1.00046 0.91717 1.00963 1.19876 0.92983 0.95360 0.92900 1.20029 0.92661 0.88156 0.95806 1.20993 1.27724 1.04530 1.00336 0.92180 1.25033 0.96312 0.95676 0.96961 1.69919 1.40491 1.09656 1.31900 0.86435 0.80175 0.77426 0.83123 1.20467 1.19758 1.21024 1.24359 0.95666 1.02424 0.81546 1.89365 1.37688 1.78319 1.27438 1.24179 0.91682 0.94887 0.92388 1.21014 0.94231 0.97117 1.01851 0.91761 0.92219 0.91905 0.87277 0.87020 0.86294 0.92456 0.87582 0.93453 0.93961 0.87541 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 36.00 0.36 -1.09 16 2 C -0.09 -1.64 5.88 -104.63 -0.62 -2.26 16 3 C -0.15 -2.40 9.70 -39.58 -0.38 -2.79 16 4 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 5 C -0.12 -2.40 9.35 -39.58 -0.37 -2.77 16 6 C -0.01 -0.25 4.82 -104.62 -0.50 -0.75 16 7 C 0.03 0.84 1.05 -155.73 -0.16 0.68 16 8 C -0.50 -13.08 8.57 -34.45 -0.30 -13.37 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.06 1.61 5.07 -17.82 -0.09 1.52 16 11 N -0.88 -23.54 8.83 55.43 0.49 -23.05 16 12 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.04 0.92 7.72 37.64 0.29 1.21 16 17 O -0.41 -10.63 12.41 -35.23 -0.44 -11.07 16 18 C 0.05 1.15 7.88 37.65 0.30 1.44 16 19 C -0.12 -2.51 8.93 -39.59 -0.35 -2.86 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 22 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 23 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 24 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 27 H 0.11 2.84 5.94 -51.93 -0.31 2.53 16 28 H 0.05 1.07 5.67 -51.93 -0.29 0.78 16 29 H 0.04 0.98 7.94 -51.93 -0.41 0.57 16 30 H 0.11 2.86 5.94 -51.93 -0.31 2.55 16 31 H 0.12 2.35 5.77 -52.49 -0.30 2.05 16 LS Contribution 257.01 15.07 3.87 3.87 Total: -1.00 -27.81 257.01 -7.03 -34.84 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.70 Total: 3.66 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -2.23 Total: -23.55 kcal Atomic # 7 Polarization: -23.54 SS G_CDS: 0.49 Total: -23.05 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.44 Total: -11.07 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.81 -7.03 -34.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258559411.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.571 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds