Wall clock time and date at job start Mon Mar 30 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.99755 * 2 1 4 4 C 1.38214 * 120.00234 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99405 * 359.76848 * 4 3 2 6 6 C 1.38221 * 120.00310 * 0.46054 * 5 4 3 7 7 C 1.50699 * 119.99940 * 179.79094 * 6 5 4 8 8 C 1.50692 * 113.00246 * 66.23200 * 7 6 5 9 9 H 1.08001 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00270 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99933 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00270 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46904 * 270.00187 * 12 10 8 14 14 H 1.48495 * 109.47191 * 29.99863 * 12 10 8 15 15 H 1.48495 * 109.47387 * 150.00350 * 12 10 8 16 16 C 1.54037 * 113.81488 * 198.05971 * 7 6 5 17 17 O 1.44450 * 85.42669 * 91.80652 * 16 7 6 18 18 C 1.44177 * 93.37952 * 24.08863 * 17 16 7 19 19 C 1.38206 * 120.00067 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47301 * 270.02540 * 1 2 3 21 21 H 1.08998 * 109.47355 * 30.02596 * 1 2 3 22 22 H 1.09004 * 109.46650 * 150.02326 * 1 2 3 23 23 H 1.07998 * 120.00349 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.00618 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.00044 * 180.25298 * 5 4 3 26 26 H 0.97003 * 120.00303 * 179.97438 * 11 10 8 27 27 H 1.08998 * 113.86240 * 205.91301 * 16 7 6 28 28 H 1.09000 * 113.86225 * 337.62025 * 16 7 6 29 29 H 1.09002 * 113.86618 * 221.76694 * 18 17 16 30 30 H 1.09002 * 113.98177 * 90.07409 * 18 17 16 31 31 H 1.07997 * 120.00365 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2716 0.0002 0.0059 6 6 3.5806 -1.1969 0.0011 7 6 4.3342 -2.5019 0.0022 8 6 5.1075 -2.7343 1.2746 9 1 5.0805 -1.9987 2.0649 10 6 5.8493 -3.8860 1.4298 11 7 5.8826 -4.7816 0.4673 12 14 6.8073 -4.1744 3.0073 13 1 8.1735 -3.6095 2.8671 14 1 6.1107 -3.5100 4.1380 15 1 6.8994 -5.6329 3.2710 16 6 3.4868 -3.7098 -0.4401 17 8 3.9781 -3.4215 -1.7675 18 6 5.1548 -2.7474 -1.2781 19 6 2.1980 -1.1969 0.0005 20 1 -0.3634 0.0005 1.0277 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3633 -0.8903 -0.5135 23 1 1.6583 2.1327 -0.0004 24 1 4.1204 2.1328 0.0001 25 1 5.3517 0.0002 0.0105 26 1 6.4048 -5.5918 0.5764 27 1 3.8333 -4.6622 -0.0388 28 1 2.4132 -3.5615 -0.3240 29 1 5.4014 -1.8374 -1.8251 30 1 6.0131 -3.4035 -1.1328 31 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258559411.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:26 Heat of formation + Delta-G solvation = -4.663259 kcal Electronic energy + Delta-G solvation = -14676.563541 eV Core-core repulsion = 12309.463945 eV Total energy + Delta-G solvation = -2367.099596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.43174 -39.38296 -34.94766 -33.69607 -32.45801 -29.43776 -27.84990 -26.78115 -26.39020 -23.61968 -22.15192 -20.24135 -18.43731 -17.81981 -16.78480 -16.34964 -16.12714 -15.75986 -15.59398 -15.16601 -14.48038 -13.94651 -13.80368 -13.22734 -13.07161 -13.04245 -12.97929 -12.69054 -12.53763 -12.21134 -12.11064 -11.46659 -11.39717 -10.84841 -10.45677 -10.17976 -9.50803 -9.21430 -8.09535 -6.34452 0.61230 0.66634 1.41038 1.43401 1.53281 2.38269 2.96705 3.05348 3.38021 3.99952 4.10375 4.19245 4.36428 4.44811 4.58290 4.62037 4.76026 4.84603 4.89618 4.99800 5.06925 5.24646 5.25485 5.40827 5.51150 5.62462 5.67782 5.70130 5.75435 5.85317 6.03600 6.25374 6.32097 6.74059 7.33969 8.82892 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.009764 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.968133 B = 2866.886862 C = 3144.557282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.116 4.116 5 C -0.140 4.140 6 C -0.044 4.044 7 C 0.035 3.965 8 C -0.515 4.515 9 H 0.051 0.949 10 C 0.022 3.978 11 N -0.903 5.903 12 Si 0.962 3.038 13 H -0.274 1.274 14 H -0.271 1.271 15 H -0.281 1.281 16 C 0.036 3.964 17 O -0.420 6.420 18 C 0.044 3.956 19 C -0.146 4.146 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.150 0.850 24 H 0.145 0.855 25 H 0.110 0.890 26 H 0.266 0.734 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 8.955 0.539 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.158 4.158 4 C -0.134 4.134 5 C -0.158 4.158 6 C -0.044 4.044 7 C 0.035 3.965 8 C -0.553 4.553 9 H 0.069 0.931 10 C -0.178 4.178 11 N -0.541 5.541 12 Si 0.787 3.213 13 H -0.200 1.200 14 H -0.196 1.196 15 H -0.207 1.207 16 C -0.041 4.041 17 O -0.340 6.340 18 C -0.033 4.033 19 C -0.164 4.164 20 H 0.097 0.903 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.167 0.833 24 H 0.163 0.837 25 H 0.128 0.872 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.330 8.716 0.240 10.775 hybrid contribution 0.956 -0.728 0.782 1.434 sum -5.374 7.988 1.022 9.682 Atomic orbital electron populations 1.20794 0.89093 1.03451 1.02989 1.20243 0.97593 0.92557 0.98962 1.21256 0.94039 0.98012 1.02482 1.21371 0.94953 0.97600 0.99499 1.21030 0.99900 0.92445 1.02464 1.19814 0.93961 0.94702 0.95920 1.19957 0.92399 0.89547 0.94625 1.21182 1.28515 1.04628 1.00941 0.93069 1.25721 0.97020 0.95367 0.99672 1.70044 1.40857 1.09852 1.33332 0.85492 0.78890 0.77261 0.79635 1.19965 1.19601 1.20675 1.24298 0.96888 1.01782 0.81104 1.89324 1.38052 1.78485 1.28137 1.24100 0.90905 0.94755 0.93508 1.21094 0.93610 0.98379 1.03312 0.90343 0.89645 0.91775 0.83266 0.83714 0.87160 0.92472 0.89846 0.91487 0.92643 0.89651 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 10.01 71.24 0.71 -1.74 16 2 C -0.09 -2.97 5.88 -19.87 -0.12 -3.09 16 3 C -0.14 -4.03 9.70 22.27 0.22 -3.82 16 4 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 5 C -0.14 -5.58 9.35 22.27 0.21 -5.37 16 6 C -0.04 -1.96 4.82 -19.86 -0.10 -2.05 16 7 C 0.04 1.78 1.05 -52.97 -0.06 1.73 16 8 C -0.52 -27.66 8.57 25.60 0.22 -27.44 16 9 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 10 C 0.02 1.16 5.07 84.65 0.43 1.59 16 11 N -0.90 -49.42 8.83 21.45 0.19 -49.24 16 12 Si 0.96 42.10 29.54 68.60 2.03 44.12 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 C 0.04 1.84 7.72 72.30 0.56 2.40 16 17 O -0.42 -22.41 12.41 -148.98 -1.85 -24.26 16 18 C 0.04 2.29 7.88 72.30 0.57 2.86 16 19 C -0.15 -5.80 8.93 22.27 0.20 -5.60 16 20 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 22 H 0.06 1.46 8.09 -2.38 -0.02 1.44 16 23 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 24 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 25 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 27 H 0.08 4.64 5.94 -2.39 -0.01 4.63 16 28 H 0.07 3.10 5.67 -2.39 -0.01 3.09 16 29 H 0.06 2.65 7.94 -2.39 -0.02 2.63 16 30 H 0.09 4.76 5.94 -2.39 -0.01 4.75 16 31 H 0.11 4.47 5.77 -2.91 -0.02 4.45 16 Total: -1.00 -60.34 257.01 4.56 -55.79 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.12 Total: 17.55 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 3.07 Total: -43.97 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.19 Total: -49.24 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -1.85 Total: -24.26 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -60.34 4.56 -55.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258559411.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.124 kcal (2) G-P(sol) polarization free energy of solvation -60.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds