Wall clock time and date at job start Mon Mar 30 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38231 * 119.99884 * 2 1 4 4 C 1.38232 * 119.99941 * 179.77036 * 3 2 1 5 5 C 1.38241 * 119.99967 * 0.50748 * 4 3 2 6 6 C 1.50695 * 120.00121 * 179.72653 * 5 4 3 7 7 C 1.50698 * 112.99969 * 230.35333 * 6 5 4 8 8 H 1.07998 * 120.00002 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00154 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00001 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00023 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46847 * 89.99826 * 11 9 7 13 13 H 1.48496 * 109.46982 * 209.99839 * 11 9 7 14 14 H 1.48492 * 109.47227 * 329.99941 * 11 9 7 15 15 C 1.54044 * 113.81667 * 98.53046 * 6 5 4 16 16 O 1.44448 * 85.42245 * 223.23337 * 15 6 5 17 17 C 1.44182 * 93.38093 * 24.08902 * 16 15 6 18 18 C 1.38238 * 119.99768 * 359.74620 * 5 4 3 19 19 C 1.38234 * 120.00037 * 0.02562 * 18 5 4 20 20 H 1.09001 * 109.46953 * 269.72179 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.71776 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.72407 * 1 2 3 23 23 H 1.07997 * 120.00101 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.00546 * 180.23234 * 4 3 2 25 25 H 0.97003 * 120.00289 * 180.02562 * 10 9 7 26 26 H 1.08996 * 113.86234 * 337.33784 * 15 6 5 27 27 H 1.08999 * 113.86198 * 109.04954 * 15 6 5 28 28 H 1.08993 * 113.86173 * 221.76732 * 17 16 15 29 29 H 1.09000 * 113.86220 * 90.06027 * 17 16 15 30 30 H 1.08003 * 119.99873 * 179.97438 * 18 5 4 31 31 H 1.07997 * 119.99984 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0048 5 6 4.2717 0.0000 -0.0010 6 6 5.7787 0.0000 -0.0020 7 6 6.3668 -0.8803 -1.0745 8 1 5.7164 -1.4273 -1.7409 9 6 7.7352 -0.9874 -1.2049 10 7 8.5272 -0.3209 -0.3938 11 14 8.4642 -2.0781 -2.5348 12 1 8.6574 -1.2844 -3.7751 13 1 9.7737 -2.6083 -2.0774 14 1 7.5410 -3.2083 -2.8092 15 6 6.4017 -0.2153 1.3903 16 8 7.3146 0.8403 1.0175 17 6 6.4008 1.4079 0.0575 18 6 3.5805 -1.1972 -0.0063 19 6 2.1982 -1.1972 -0.0063 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8925 -0.5094 22 1 -0.3633 -0.8875 -0.5181 23 1 1.6582 2.1324 0.0004 24 1 4.1206 2.1324 0.0086 25 1 9.4900 -0.3959 -0.4857 26 1 5.7388 0.0459 2.2151 27 1 6.8775 -1.1880 1.5149 28 1 6.8758 1.7197 -0.8726 29 1 5.7376 2.1658 0.4746 30 1 4.1206 -2.1325 -0.0113 31 1 1.6582 -2.1324 -0.0109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258764670.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:31 Heat of formation + Delta-G solvation = 27.392784 kcal Electronic energy + Delta-G solvation = -14636.392337 eV Core-core repulsion = 12270.682796 eV Total energy + Delta-G solvation = -2365.709541 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.50943 -37.83809 -32.79311 -32.17912 -30.31843 -28.77436 -25.55290 -25.02609 -24.25724 -21.82238 -20.91297 -18.77072 -16.26558 -16.03624 -14.74189 -14.67032 -14.33208 -13.86621 -13.62482 -13.41911 -13.27636 -12.75070 -12.01453 -11.93688 -11.67008 -11.47900 -11.13137 -10.82937 -10.71959 -10.38389 -10.28797 -9.72339 -9.52145 -8.78972 -8.45916 -8.27512 -7.85520 -7.53877 -5.78467 -4.12242 2.03688 2.06134 3.29139 3.36807 3.39296 4.36138 4.47604 5.19061 5.29158 5.31171 5.47061 5.59376 5.70890 5.78382 5.90543 6.04392 6.14852 6.29722 6.38826 6.49762 6.50597 6.74406 6.76706 7.03382 7.14450 7.22149 7.28583 7.51686 7.73573 7.76355 7.86198 7.99164 8.33986 8.90663 9.53079 11.02963 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037626 B = 0.009357 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.979238 B = 2991.643838 C = 3445.946506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.118 4.118 3 C -0.125 4.125 4 C -0.130 4.130 5 C -0.041 4.041 6 C 0.058 3.942 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.824 5.824 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.038 3.962 16 O -0.315 6.315 17 C 0.028 3.972 18 C -0.105 4.105 19 C -0.126 4.126 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.255 0.745 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.123 0.877 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 0.762 1.204 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.143 4.143 4 C -0.148 4.148 5 C -0.041 4.041 6 C 0.057 3.943 7 C -0.552 4.552 8 H 0.081 0.919 9 C -0.140 4.140 10 N -0.457 5.457 11 Si 0.714 3.286 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.040 4.040 16 O -0.231 6.231 17 C -0.050 4.050 18 C -0.123 4.123 19 C -0.145 4.145 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.128 0.872 24 H 0.138 0.862 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.141 0.859 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.840 0.878 1.349 9.971 hybrid contribution 0.337 -0.582 -0.797 1.043 sum -9.503 0.295 0.552 9.524 Atomic orbital electron populations 1.20682 0.92205 1.01898 1.01430 1.19703 0.95216 0.93515 1.03350 1.20872 0.94271 0.96775 1.02364 1.21199 0.93618 0.98430 1.01520 1.20495 0.97774 0.92142 0.93722 1.20201 0.85255 0.94107 0.94704 1.20542 0.91136 1.27969 1.15577 0.91930 1.25202 0.97467 0.95542 0.95823 1.70600 1.03294 1.37783 1.34072 0.86692 0.78690 0.81014 0.82218 1.20663 1.21207 1.19873 1.23897 0.91224 0.93256 0.95669 1.89866 1.32785 1.43350 1.57144 1.24014 0.91469 0.96142 0.93382 1.21088 0.93104 0.98755 0.99314 1.20957 0.94483 0.96772 1.02242 0.92049 0.92262 0.92225 0.87203 0.86213 0.93447 0.95141 0.90961 0.91084 0.94701 0.85911 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.12 -1.87 5.88 -104.62 -0.62 -2.48 16 3 C -0.12 -2.07 9.70 -39.59 -0.38 -2.45 16 4 C -0.13 -2.48 9.20 -39.58 -0.36 -2.84 16 5 C -0.04 -0.88 5.03 -104.62 -0.53 -1.41 16 6 C 0.06 1.41 1.19 -155.73 -0.19 1.23 16 7 C -0.52 -13.74 8.17 -34.44 -0.28 -14.02 16 8 H 0.06 1.67 7.58 -52.49 -0.40 1.27 16 9 C 0.07 1.81 5.20 -17.82 -0.09 1.71 16 10 N -0.82 -23.22 9.23 55.43 0.51 -22.71 16 11 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.04 0.93 7.76 37.65 0.29 1.23 16 16 O -0.32 -8.47 9.43 -35.23 -0.33 -8.81 16 17 C 0.03 0.69 7.24 37.64 0.27 0.96 16 18 C -0.10 -2.07 9.16 -39.58 -0.36 -2.43 16 19 C -0.13 -2.14 9.70 -39.58 -0.38 -2.53 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 22 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 23 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 24 H 0.12 2.18 5.78 -52.49 -0.30 1.88 16 25 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.03 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.07 1.86 8.04 -51.93 -0.42 1.44 16 28 H 0.07 1.83 8.05 -51.93 -0.42 1.42 16 29 H 0.04 0.76 5.94 -51.93 -0.31 0.45 16 30 H 0.12 2.45 7.89 -52.48 -0.41 2.03 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 257.86 15.07 3.89 3.89 Total: -1.00 -28.76 257.86 -7.15 -35.91 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.92 Total: -0.18 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.27 Total: -23.94 kcal Atomic # 7 Polarization: -23.22 SS G_CDS: 0.51 Total: -22.71 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.33 Total: -8.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.76 -7.15 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258764670.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.300 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds