Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38460 * 119.84841 * 2 1 4 4 C 1.37863 * 120.16151 * 179.97438 * 3 2 1 5 5 C 1.39770 * 119.83939 * 359.97438 * 4 3 2 6 6 C 1.47823 * 120.15020 * 180.02562 * 5 4 3 7 7 O 1.21764 * 119.99429 * 174.00743 * 6 5 4 8 8 C 1.41798 * 120.00441 * 354.00526 * 6 5 4 9 9 H 1.08001 * 120.00159 * 0.02562 * 8 6 5 10 10 C 1.40349 * 120.00369 * 180.02562 * 8 6 5 11 11 N 1.30533 * 119.99638 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 120.00293 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46854 * 89.99892 * 12 10 8 14 14 H 1.48506 * 109.46956 * 209.99873 * 12 10 8 15 15 H 1.48501 * 109.47027 * 329.99872 * 12 10 8 16 16 C 1.39724 * 119.69257 * 359.97438 * 5 4 3 17 17 C 1.50691 * 120.07961 * 179.97438 * 16 5 4 18 18 C 1.37909 * 119.83767 * 359.76909 * 16 5 4 19 19 C 1.50702 * 119.92082 * 180.24970 * 18 16 5 20 20 H 1.09004 * 109.46987 * 89.99865 * 1 2 3 21 21 H 1.09003 * 109.47449 * 330.00183 * 1 2 3 22 22 H 1.09001 * 109.48000 * 210.00050 * 1 2 3 23 23 H 1.08000 * 119.91877 * 359.97438 * 3 2 1 24 24 H 1.07994 * 120.08315 * 180.02562 * 4 3 2 25 25 H 0.97005 * 119.99693 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.47070 * 83.42566 * 17 16 5 27 27 H 1.08994 * 109.47521 * 203.42697 * 17 16 5 28 28 H 1.09002 * 109.47160 * 323.43227 * 17 16 5 29 29 H 1.08993 * 109.47264 * 270.23699 * 19 18 16 30 30 H 1.09006 * 109.46774 * 30.23620 * 19 18 16 31 31 H 1.08999 * 109.47185 * 150.22819 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.2009 0.0000 4 6 3.5746 1.2085 0.0005 5 6 4.2767 -0.0001 0.0016 6 6 5.7549 -0.0001 0.0028 7 8 6.3636 -1.0488 0.1138 8 6 6.4641 1.2211 -0.1255 9 1 5.9242 2.1514 -0.2236 10 6 7.8675 1.2211 -0.1249 11 7 8.5201 0.0969 -0.0058 12 14 8.8017 2.8299 -0.2946 13 1 9.0487 3.4033 1.0528 14 1 10.0996 2.5796 -0.9716 15 1 7.9995 3.7855 -1.0999 16 6 3.5748 -1.2083 0.0027 17 6 4.3229 -2.5164 0.0033 18 6 2.1957 -1.2006 0.0075 19 6 1.4368 -2.5026 0.0144 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 0.8900 0.5138 22 1 -0.3635 -0.8899 0.5138 23 1 1.6522 2.1340 -0.0004 24 1 4.1108 2.1459 0.0010 25 1 9.4901 0.0968 -0.0058 26 1 4.6058 -2.7727 1.0243 27 1 3.6847 -3.3002 -0.4045 28 1 5.2195 -2.4224 -0.6094 29 1 1.2539 -2.8220 -1.0116 30 1 2.0228 -3.2619 0.5323 31 1 0.4850 -2.3657 0.5275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259271888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = -32.766210 kcal Electronic energy + Delta-G solvation = -14325.304207 eV Core-core repulsion = 11956.985976 eV Total energy + Delta-G solvation = -2368.318231 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.16401 -36.44086 -33.05198 -32.72166 -32.20496 -28.03707 -27.55681 -25.68573 -25.31780 -21.37084 -20.12057 -19.09884 -16.34232 -15.65120 -15.22399 -14.50744 -14.05492 -13.85498 -13.10617 -12.81284 -12.66755 -12.42763 -12.25206 -12.19336 -11.82641 -11.55182 -11.34343 -11.06496 -10.86516 -10.61359 -10.56919 -10.46194 -10.28586 -9.87496 -8.97103 -7.82793 -7.65954 -7.31920 -6.26301 -4.89413 1.89309 2.13145 3.04708 3.12470 3.15886 4.00571 4.06069 4.64365 5.26101 5.36592 5.51207 5.55365 5.76096 5.78106 5.83575 5.95976 5.97984 6.08800 6.15629 6.26796 6.34092 6.49807 6.65481 6.77718 6.91137 7.12901 7.19559 7.24600 7.33841 7.55635 7.82879 8.06036 8.79494 8.85640 10.31247 10.53434 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043375 B = 0.008350 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.376669 B = 3352.374668 C = 3968.575134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.092 4.092 5 C -0.111 4.111 6 C 0.388 3.612 7 O -0.533 6.533 8 C -0.517 4.517 9 H 0.073 0.927 10 C 0.080 3.920 11 N -0.736 5.736 12 Si 0.905 3.095 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.261 1.261 16 C -0.053 4.053 17 C -0.111 4.111 18 C -0.109 4.109 19 C -0.111 4.111 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.111 0.889 24 H 0.127 0.873 25 H 0.274 0.726 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 0.600 -0.345 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.160 4.160 4 C -0.111 4.111 5 C -0.112 4.112 6 C 0.284 3.716 7 O -0.423 6.423 8 C -0.548 4.548 9 H 0.091 0.909 10 C -0.143 4.143 11 N -0.365 5.365 12 Si 0.729 3.271 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.185 1.185 16 C -0.053 4.053 17 C -0.167 4.167 18 C -0.109 4.109 19 C -0.167 4.167 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.129 0.871 24 H 0.144 0.856 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.924 -0.037 -0.280 9.928 hybrid contribution 0.343 1.107 -0.074 1.161 sum -9.581 1.070 -0.354 9.647 Atomic orbital electron populations 1.20771 0.92284 1.01993 1.01528 1.19651 0.95046 0.92872 1.02381 1.20847 0.94470 0.96603 1.04093 1.21478 0.93166 0.98505 0.97903 1.21684 0.99642 0.91723 0.98149 1.18119 0.83951 0.90206 0.79312 1.90421 1.69302 1.33844 1.48775 1.20949 0.91632 0.95520 1.46746 0.90882 1.25994 0.98286 0.97241 0.92764 1.69955 1.08539 1.27029 1.30961 0.86394 0.79094 0.82338 0.79270 1.19399 1.20152 1.18535 1.20049 0.92120 0.95908 0.97252 1.20993 1.00701 0.92006 1.03038 1.19484 0.93248 0.94357 1.03833 1.20798 0.99350 0.94994 1.01557 0.91934 0.92289 0.91743 0.87104 0.85551 0.91538 0.91879 0.94124 0.88152 0.91975 0.91647 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.60 36.00 0.35 -1.06 16 2 C -0.10 -1.71 5.89 -104.48 -0.62 -2.33 16 3 C -0.14 -2.57 9.68 -39.64 -0.38 -2.95 16 4 C -0.09 -1.96 9.43 -39.15 -0.37 -2.33 16 5 C -0.11 -2.70 5.88 -104.85 -0.62 -3.32 16 6 C 0.39 11.02 6.85 -34.30 -0.23 10.78 16 7 O -0.53 -16.45 11.89 5.13 0.06 -16.39 16 8 C -0.52 -14.32 8.85 -37.43 -0.33 -14.65 16 9 H 0.07 1.85 6.07 -52.49 -0.32 1.53 16 10 C 0.08 2.16 5.50 -17.31 -0.10 2.06 16 11 N -0.74 -21.07 11.73 55.57 0.65 -20.42 16 12 Si 0.91 19.34 29.56 -169.99 -5.03 14.31 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 C -0.05 -1.17 5.92 -104.19 -0.62 -1.79 16 17 C -0.11 -2.38 8.09 36.00 0.29 -2.09 16 18 C -0.11 -2.03 5.87 -104.67 -0.61 -2.64 16 19 C -0.11 -1.61 8.77 36.01 0.32 -1.29 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 22 H 0.06 0.75 5.92 -51.93 -0.31 0.44 16 23 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 24 H 0.13 2.58 6.25 -52.49 -0.33 2.26 16 25 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 28 H 0.10 2.47 5.85 -51.93 -0.30 2.16 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 31 H 0.06 0.77 5.93 -51.93 -0.31 0.46 16 LS Contribution 256.63 15.07 3.87 3.87 Total: -1.00 -31.29 256.63 -6.85 -38.14 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.48 Total: 2.08 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.93 Total: -21.59 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.65 Total: -20.42 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.06 Total: -16.39 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.29 -6.85 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259271888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.377 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds