Wall clock time and date at job start Mon Mar 30 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38460 * 119.84841 * 2 1 4 4 C 1.37863 * 120.16151 * 179.97438 * 3 2 1 5 5 C 1.39770 * 119.83939 * 359.97438 * 4 3 2 6 6 C 1.47823 * 120.15020 * 180.02562 * 5 4 3 7 7 O 1.21764 * 119.99429 * 174.00743 * 6 5 4 8 8 C 1.41798 * 120.00441 * 354.00526 * 6 5 4 9 9 H 1.08001 * 120.00159 * 0.02562 * 8 6 5 10 10 C 1.40349 * 120.00369 * 180.02562 * 8 6 5 11 11 N 1.30533 * 119.99638 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 120.00293 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46854 * 89.99892 * 12 10 8 14 14 H 1.48506 * 109.46956 * 209.99873 * 12 10 8 15 15 H 1.48501 * 109.47027 * 329.99872 * 12 10 8 16 16 C 1.39724 * 119.69257 * 359.97438 * 5 4 3 17 17 C 1.50691 * 120.07961 * 179.97438 * 16 5 4 18 18 C 1.37909 * 119.83767 * 359.76909 * 16 5 4 19 19 C 1.50702 * 119.92082 * 180.24970 * 18 16 5 20 20 H 1.09004 * 109.46987 * 89.99865 * 1 2 3 21 21 H 1.09003 * 109.47449 * 330.00183 * 1 2 3 22 22 H 1.09001 * 109.48000 * 210.00050 * 1 2 3 23 23 H 1.08000 * 119.91877 * 359.97438 * 3 2 1 24 24 H 1.07994 * 120.08315 * 180.02562 * 4 3 2 25 25 H 0.97005 * 119.99693 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.47070 * 83.42566 * 17 16 5 27 27 H 1.08994 * 109.47521 * 203.42697 * 17 16 5 28 28 H 1.09002 * 109.47160 * 323.43227 * 17 16 5 29 29 H 1.08993 * 109.47264 * 270.23699 * 19 18 16 30 30 H 1.09006 * 109.46774 * 30.23620 * 19 18 16 31 31 H 1.08999 * 109.47185 * 150.22819 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.2009 0.0000 4 6 3.5746 1.2085 0.0005 5 6 4.2767 -0.0001 0.0016 6 6 5.7549 -0.0001 0.0028 7 8 6.3636 -1.0488 0.1138 8 6 6.4641 1.2211 -0.1255 9 1 5.9242 2.1514 -0.2236 10 6 7.8675 1.2211 -0.1249 11 7 8.5201 0.0969 -0.0058 12 14 8.8017 2.8299 -0.2946 13 1 9.0487 3.4033 1.0528 14 1 10.0996 2.5796 -0.9716 15 1 7.9995 3.7855 -1.0999 16 6 3.5748 -1.2083 0.0027 17 6 4.3229 -2.5164 0.0033 18 6 2.1957 -1.2006 0.0075 19 6 1.4368 -2.5026 0.0144 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 0.8900 0.5138 22 1 -0.3635 -0.8899 0.5138 23 1 1.6522 2.1340 -0.0004 24 1 4.1108 2.1459 0.0010 25 1 9.4901 0.0968 -0.0058 26 1 4.6058 -2.7727 1.0243 27 1 3.6847 -3.3002 -0.4045 28 1 5.2195 -2.4224 -0.6094 29 1 1.2539 -2.8220 -1.0116 30 1 2.0228 -3.2619 0.5323 31 1 0.4850 -2.3657 0.5275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259271888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:13 Heat of formation + Delta-G solvation = -51.420476 kcal Electronic energy + Delta-G solvation = -14326.113116 eV Core-core repulsion = 11956.985976 eV Total energy + Delta-G solvation = -2369.127141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74639 -38.41259 -34.95368 -34.26028 -33.87289 -29.76156 -29.02783 -27.38096 -26.80554 -23.11116 -21.67154 -20.83231 -18.31623 -17.53003 -16.70043 -16.17848 -15.47717 -15.40620 -14.91495 -14.38824 -14.26859 -13.75635 -13.67615 -13.59653 -13.42131 -13.16014 -13.00501 -12.73699 -12.43129 -12.38884 -12.12843 -12.06260 -11.85087 -11.49164 -10.99318 -9.42993 -9.33738 -9.24941 -8.30166 -7.06418 0.27892 0.58688 1.35460 1.36315 1.52322 2.19417 2.23422 2.87341 3.72061 3.98121 4.04404 4.15941 4.24488 4.40336 4.50816 4.69694 4.77078 4.84810 4.89432 4.90827 4.97320 5.08991 5.14549 5.19052 5.23133 5.46444 5.48728 5.70145 5.78125 5.88262 6.00729 6.29615 6.70071 6.81225 8.25965 8.48803 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043375 B = 0.008350 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.376669 B = 3352.374668 C = 3968.575134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.158 4.158 6 C 0.363 3.637 7 O -0.577 6.577 8 C -0.548 4.548 9 H 0.088 0.912 10 C 0.024 3.976 11 N -0.788 5.788 12 Si 0.994 3.006 13 H -0.258 1.258 14 H -0.267 1.267 15 H -0.248 1.248 16 C -0.078 4.078 17 C -0.100 4.100 18 C -0.111 4.111 19 C -0.109 4.109 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.149 0.851 24 H 0.124 0.876 25 H 0.282 0.718 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 2.074 -0.542 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.089 4.089 3 C -0.155 4.155 4 C -0.122 4.122 5 C -0.160 4.160 6 C 0.263 3.737 7 O -0.471 6.471 8 C -0.579 4.579 9 H 0.106 0.894 10 C -0.194 4.194 11 N -0.417 5.417 12 Si 0.812 3.188 13 H -0.182 1.182 14 H -0.191 1.191 15 H -0.172 1.172 16 C -0.079 4.079 17 C -0.156 4.156 18 C -0.111 4.111 19 C -0.165 4.165 20 H 0.100 0.900 21 H 0.097 0.903 22 H 0.101 0.899 23 H 0.167 0.833 24 H 0.142 0.858 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.857 1.440 -0.477 12.946 hybrid contribution 1.100 0.604 -0.010 1.255 sum -11.756 2.045 -0.486 11.943 Atomic orbital electron populations 1.20879 0.88200 1.03954 1.03277 1.20280 0.97871 0.91789 0.98979 1.21251 0.93048 0.98858 1.02347 1.21530 0.94887 0.97178 0.98602 1.21444 0.97686 0.94250 1.02575 1.18819 0.86470 0.90037 0.78401 1.90376 1.71053 1.34979 1.50687 1.21437 0.92914 0.96099 1.47460 0.89363 1.27231 0.99076 1.01753 0.91374 1.70094 1.09353 1.30240 1.31984 0.85079 0.77414 0.76478 0.79829 1.18238 1.19129 1.17151 1.20238 0.94078 0.94954 0.98596 1.20791 0.99742 0.93545 1.01518 1.19932 0.91847 0.97127 1.02226 1.20886 1.00045 0.92597 1.03020 0.90024 0.90320 0.89940 0.83340 0.85828 0.90803 0.93281 0.90507 0.92341 0.90328 0.91807 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.60 71.23 0.68 -1.44 16 2 C -0.09 -2.75 5.89 -19.77 -0.12 -2.86 16 3 C -0.14 -4.60 9.68 22.23 0.22 -4.39 16 4 C -0.10 -4.43 9.43 22.55 0.21 -4.22 16 5 C -0.16 -8.07 5.88 -20.01 -0.12 -8.19 16 6 C 0.36 22.05 6.85 25.69 0.18 22.22 16 7 O -0.58 -38.51 11.89 -4.55 -0.05 -38.57 16 8 C -0.55 -31.78 8.85 23.66 0.21 -31.57 16 9 H 0.09 4.63 6.07 -2.91 -0.02 4.61 16 10 C 0.02 1.35 5.50 85.40 0.47 1.82 16 11 N -0.79 -47.39 11.73 21.89 0.26 -47.13 16 12 Si 0.99 40.31 29.56 68.60 2.03 42.33 16 13 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 14 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 15 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 16 C -0.08 -3.54 5.92 -19.59 -0.12 -3.65 16 17 C -0.10 -4.47 8.09 71.23 0.58 -3.90 16 18 C -0.11 -3.90 5.87 -19.90 -0.12 -4.02 16 19 C -0.11 -2.78 8.77 71.24 0.62 -2.16 16 20 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 21 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 22 H 0.08 1.39 5.92 -2.39 -0.01 1.37 16 23 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 24 H 0.12 5.15 6.25 -2.91 -0.02 5.13 16 25 H 0.28 15.12 8.29 -92.70 -0.77 14.35 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.08 2.75 6.35 -2.39 -0.02 2.73 16 28 H 0.06 3.11 5.85 -2.39 -0.01 3.10 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.65 6.58 -2.38 -0.02 1.63 16 31 H 0.09 1.80 5.93 -2.39 -0.01 1.79 16 Total: -1.00 -74.17 256.63 6.07 -68.09 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.14 Total: 17.62 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 2.70 Total: -42.35 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.26 Total: -47.13 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.05 Total: -38.57 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Total: -74.17 6.07 -68.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259271888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.673 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds