Wall clock time and date at job start Mon Mar 30 2020 02:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47179 * 299.99787 * 3 2 1 6 6 H 1.48503 * 109.47456 * 59.99361 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00215 * 197.71933 * 7 2 1 9 9 C 1.41404 * 119.99508 * 17.71502 * 7 2 1 10 10 C 1.40711 * 120.24129 * 204.26753 * 9 7 2 11 11 C 1.37616 * 119.74696 * 179.70362 * 10 9 7 12 12 C 1.38639 * 120.24706 * 0.27455 * 11 10 9 13 13 C 1.50694 * 119.75455 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47364 * 89.99569 * 13 12 11 15 15 O 1.42901 * 115.54814 * 39.42480 * 14 13 12 16 16 C 1.52999 * 117.50530 * 253.75218 * 14 13 12 17 17 C 1.53002 * 117.50263 * 185.08862 * 14 13 12 18 18 C 1.38633 * 120.49785 * 0.02562 * 12 11 10 19 19 C 1.37620 * 120.25202 * 0.02562 * 18 12 11 20 20 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 21 21 H 1.08009 * 120.12977 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.88000 * 180.29999 * 11 10 9 23 23 H 1.08995 * 109.47413 * 210.00711 * 13 12 11 24 24 H 1.09007 * 109.46934 * 330.00353 * 13 12 11 25 25 H 0.96703 * 114.00117 * 325.57710 * 15 14 13 26 26 H 1.09002 * 117.49591 * 359.97438 * 16 14 13 27 27 H 1.08998 * 117.50299 * 145.01737 * 16 14 13 28 28 H 1.09001 * 117.50197 * 214.98628 * 17 14 13 29 29 H 1.09002 * 117.49521 * 359.97438 * 17 14 13 30 30 H 1.08000 * 119.87921 * 179.97438 * 18 12 11 31 31 H 1.07999 * 120.12987 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2340 0.2852 9 6 1.3512 -2.4076 -0.3716 10 6 1.8274 -3.6499 0.0867 11 6 1.1767 -4.8068 -0.2767 12 6 0.0595 -4.7519 -1.0958 13 6 -0.6447 -6.0256 -1.4864 14 6 -1.7298 -6.3450 -0.4562 15 8 -2.4642 -5.2214 0.0339 16 6 -1.4626 -7.4938 0.5183 17 6 -2.4824 -7.6682 -0.6099 18 6 -0.4146 -3.5340 -1.5583 19 6 0.2208 -2.3645 -1.2084 20 1 -0.4850 0.8400 -0.0004 21 1 2.6976 -3.6950 0.7249 22 1 1.5375 -5.7610 0.0778 23 1 -1.1011 -5.9019 -2.4685 24 1 0.0754 -6.8431 -1.5208 25 1 -1.9399 -4.4127 0.1125 26 1 -0.5139 -8.0224 0.4252 27 1 -1.8472 -7.3928 1.5332 28 1 -3.5376 -7.6818 -0.3368 29 1 -2.2048 -8.3110 -1.4453 30 1 -1.2856 -3.5029 -2.1962 31 1 -0.1500 -1.4169 -1.5702 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259324204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:04 Heat of formation + Delta-G solvation = -17.802671 kcal Electronic energy + Delta-G solvation = -14153.639217 eV Core-core repulsion = 11785.969854 eV Total energy + Delta-G solvation = -2367.669363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.68443 -37.07159 -33.86094 -33.54600 -30.97949 -29.34080 -27.53078 -24.13882 -22.20940 -21.04830 -20.56862 -19.61598 -17.34930 -16.50499 -15.37807 -14.78367 -14.42519 -14.00221 -13.85786 -13.52599 -12.62861 -12.41896 -12.01468 -11.83149 -11.61262 -11.33066 -11.15227 -11.01482 -10.96902 -10.78229 -10.39727 -10.09692 -9.55568 -9.43295 -9.17569 -8.78614 -7.54198 -7.36866 -6.82298 -4.40876 2.67489 2.98793 3.04931 3.09521 3.13180 3.89179 4.05866 4.51501 4.53270 5.09118 5.23117 5.51938 5.63884 5.81881 6.03888 6.04756 6.14575 6.17888 6.33080 6.35781 6.40664 6.42121 6.90340 7.02285 7.20904 7.30559 7.54592 7.79666 7.99270 8.04952 8.18652 8.24337 8.57803 8.83518 8.90596 10.12239 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.058573 B = 0.006771 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.924374 B = 4134.013016 C = 4321.637190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.111 3.889 10 C -0.226 4.226 11 C -0.079 4.079 12 C -0.228 4.228 13 C -0.043 4.043 14 C 0.078 3.922 15 O -0.539 6.539 16 C -0.204 4.204 17 C -0.174 4.174 18 C -0.098 4.098 19 C -0.165 4.165 20 H 0.281 0.719 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.392 0.608 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -6.295 -1.448 6.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.109 3.891 10 C -0.246 4.246 11 C -0.097 4.097 12 C -0.230 4.230 13 C -0.080 4.080 14 C 0.036 3.964 15 O -0.348 6.348 16 C -0.242 4.242 17 C -0.211 4.211 18 C -0.117 4.117 19 C -0.184 4.184 20 H 0.092 0.908 21 H 0.110 0.890 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.244 0.756 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.885 -6.541 -1.416 6.953 hybrid contribution 0.718 1.150 0.151 1.364 sum -1.167 -5.391 -1.265 5.659 Atomic orbital electron populations 1.69819 1.07595 1.29271 1.34815 1.25926 0.94740 1.01395 0.92188 0.86269 0.81010 0.80913 0.78606 1.18390 1.19660 1.19956 1.19651 0.98137 0.91260 1.39952 0.90376 1.17658 0.91104 0.92036 0.88350 1.20979 1.03703 0.92903 1.06993 1.20381 0.95366 0.96448 0.97525 1.18919 1.01380 0.92936 1.09721 1.20254 0.94619 0.96760 0.96383 1.21496 0.95149 0.82751 0.97004 1.86234 1.40247 1.21399 1.86953 1.23549 1.00104 1.04452 0.96047 1.23196 0.98185 0.98827 1.00940 1.20605 0.98604 0.92639 0.99834 1.21329 0.99244 0.96801 1.01021 0.90811 0.89016 0.89530 0.91766 0.91670 0.75565 0.88851 0.88903 0.88860 0.88465 0.89233 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.99 10.96 55.55 0.61 -19.38 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -11.99 9.05 -37.74 -0.34 -12.34 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.11 2.88 5.57 -106.82 -0.60 2.29 16 10 C -0.23 -5.42 9.80 -38.88 -0.38 -5.80 16 11 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 12 C -0.23 -4.76 4.21 -104.33 -0.44 -5.19 16 13 C -0.04 -0.74 5.56 -27.89 -0.16 -0.90 16 14 C 0.08 1.34 3.11 -90.62 -0.28 1.06 16 15 O -0.54 -10.66 13.83 -35.23 -0.49 -11.15 16 16 C -0.20 -3.08 10.13 -26.69 -0.27 -3.35 16 17 C -0.17 -2.49 10.20 -26.69 -0.27 -2.76 16 18 C -0.10 -2.20 8.40 -39.66 -0.33 -2.53 16 19 C -0.16 -4.13 8.70 -38.87 -0.34 -4.47 16 20 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 21 H 0.09 2.09 8.06 -52.48 -0.42 1.66 16 22 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 23 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 24 H 0.06 1.03 7.88 -51.93 -0.41 0.62 16 25 H 0.39 8.00 6.47 45.56 0.29 8.30 16 26 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.12 3.08 6.17 -52.49 -0.32 2.76 16 LS Contribution 266.73 15.07 4.02 4.02 Total: -1.00 -26.44 266.73 -8.13 -34.57 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -3.36 Total: 12.95 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: -3.88 Total: -34.31 kcal Atomic # 7 Polarization: -19.99 SS G_CDS: 0.61 Total: -19.38 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.49 Total: -11.15 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.44 -8.13 -34.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.769 kcal (2) G-P(sol) polarization free energy of solvation -26.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds