Wall clock time and date at job start Mon Mar 30 2020 02:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47179 * 299.99787 * 3 2 1 6 6 H 1.48503 * 109.47456 * 59.99361 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00215 * 197.71933 * 7 2 1 9 9 C 1.41404 * 119.99508 * 17.71502 * 7 2 1 10 10 C 1.40711 * 120.24129 * 204.26753 * 9 7 2 11 11 C 1.37616 * 119.74696 * 179.70362 * 10 9 7 12 12 C 1.38639 * 120.24706 * 0.27455 * 11 10 9 13 13 C 1.50694 * 119.75455 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47364 * 89.99569 * 13 12 11 15 15 O 1.42901 * 115.54814 * 39.42480 * 14 13 12 16 16 C 1.52999 * 117.50530 * 253.75218 * 14 13 12 17 17 C 1.53002 * 117.50263 * 185.08862 * 14 13 12 18 18 C 1.38633 * 120.49785 * 0.02562 * 12 11 10 19 19 C 1.37620 * 120.25202 * 0.02562 * 18 12 11 20 20 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 21 21 H 1.08009 * 120.12977 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.88000 * 180.29999 * 11 10 9 23 23 H 1.08995 * 109.47413 * 210.00711 * 13 12 11 24 24 H 1.09007 * 109.46934 * 330.00353 * 13 12 11 25 25 H 0.96703 * 114.00117 * 325.57710 * 15 14 13 26 26 H 1.09002 * 117.49591 * 359.97438 * 16 14 13 27 27 H 1.08998 * 117.50299 * 145.01737 * 16 14 13 28 28 H 1.09001 * 117.50197 * 214.98628 * 17 14 13 29 29 H 1.09002 * 117.49521 * 359.97438 * 17 14 13 30 30 H 1.08000 * 119.87921 * 179.97438 * 18 12 11 31 31 H 1.07999 * 120.12987 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2340 0.2852 9 6 1.3512 -2.4076 -0.3716 10 6 1.8274 -3.6499 0.0867 11 6 1.1767 -4.8068 -0.2767 12 6 0.0595 -4.7519 -1.0958 13 6 -0.6447 -6.0256 -1.4864 14 6 -1.7298 -6.3450 -0.4562 15 8 -2.4642 -5.2214 0.0339 16 6 -1.4626 -7.4938 0.5183 17 6 -2.4824 -7.6682 -0.6099 18 6 -0.4146 -3.5340 -1.5583 19 6 0.2208 -2.3645 -1.2084 20 1 -0.4850 0.8400 -0.0004 21 1 2.6976 -3.6950 0.7249 22 1 1.5375 -5.7610 0.0778 23 1 -1.1011 -5.9019 -2.4685 24 1 0.0754 -6.8431 -1.5208 25 1 -1.9399 -4.4127 0.1125 26 1 -0.5139 -8.0224 0.4252 27 1 -1.8472 -7.3928 1.5332 28 1 -3.5376 -7.6818 -0.3368 29 1 -2.2048 -8.3110 -1.4453 30 1 -1.2856 -3.5029 -2.1962 31 1 -0.1500 -1.4169 -1.5702 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259324204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:04 Heat of formation + Delta-G solvation = -32.550092 kcal Electronic energy + Delta-G solvation = -14154.278713 eV Core-core repulsion = 11785.969854 eV Total energy + Delta-G solvation = -2368.308860 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19315 -38.69171 -35.66304 -34.93018 -32.69656 -31.16379 -29.21183 -25.87149 -23.36340 -22.85326 -22.19106 -21.11218 -19.21987 -17.92452 -17.17246 -16.25774 -15.92815 -15.62136 -15.40964 -15.07766 -14.30263 -13.91507 -13.81088 -13.48907 -13.15443 -12.77226 -12.74223 -12.63318 -12.43749 -12.19697 -12.04648 -11.64527 -11.28273 -11.13601 -10.94404 -10.07624 -9.37491 -9.20192 -8.64765 -6.33659 0.92540 1.13195 1.38311 1.49059 1.53271 2.20553 2.69148 2.83982 3.25097 3.65504 3.91018 4.05407 4.16688 4.44636 4.54091 4.70583 4.75580 4.82281 4.86199 4.99835 5.03947 5.09345 5.17153 5.26722 5.38141 5.46699 5.70390 5.98001 6.10392 6.23686 6.38612 6.67642 6.72126 6.94161 7.03002 8.32220 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.058573 B = 0.006771 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.924374 B = 4134.013016 C = 4321.637190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.501 4.501 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.242 4.242 11 C -0.081 4.081 12 C -0.211 4.211 13 C -0.037 4.037 14 C 0.041 3.959 15 O -0.556 6.556 16 C -0.200 4.200 17 C -0.152 4.152 18 C -0.099 4.099 19 C -0.187 4.187 20 H 0.288 0.712 21 H 0.095 0.905 22 H 0.117 0.883 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.383 0.617 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -7.975 -1.849 8.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.261 4.261 11 C -0.099 4.099 12 C -0.212 4.212 13 C -0.074 4.074 14 C 0.000 4.000 15 O -0.365 6.365 16 C -0.237 4.237 17 C -0.189 4.189 18 C -0.117 4.117 19 C -0.207 4.207 20 H 0.098 0.902 21 H 0.113 0.887 22 H 0.135 0.865 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.234 0.766 26 H 0.131 0.869 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.933 -8.251 -1.820 8.667 hybrid contribution 0.658 1.480 0.265 1.642 sum -1.275 -6.771 -1.554 7.063 Atomic orbital electron populations 1.69870 1.08942 1.30486 1.35631 1.26737 0.95491 1.04473 0.91259 0.85178 0.79417 0.76310 0.78926 1.18245 1.18894 1.19108 1.19868 0.98272 0.92623 1.42236 0.90836 1.17991 0.92019 0.93080 0.89317 1.21183 1.04277 0.93257 1.07417 1.20714 0.95172 0.96921 0.97047 1.19321 1.00399 0.94023 1.07427 1.20268 0.94965 0.95342 0.96840 1.21778 0.96700 0.82956 0.98589 1.86234 1.40969 1.21829 1.87474 1.23643 1.01422 1.02780 0.95853 1.23339 0.98135 0.96174 1.01250 1.20793 0.98652 0.92528 0.99743 1.21272 1.00091 0.97127 1.02185 0.90157 0.88681 0.86463 0.90879 0.89168 0.76589 0.86909 0.89439 0.88705 0.85605 0.87819 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.09 10.96 21.83 0.24 -42.85 16 2 C 0.04 1.79 5.14 85.26 0.44 2.22 16 3 Si 0.98 38.30 29.59 68.60 2.03 40.33 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.50 -27.09 9.05 23.46 0.21 -26.88 16 8 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 9 C 0.08 4.20 5.57 -21.29 -0.12 4.08 16 10 C -0.24 -11.70 9.80 22.73 0.22 -11.48 16 11 C -0.08 -3.36 9.67 22.22 0.21 -3.15 16 12 C -0.21 -8.42 4.21 -19.68 -0.08 -8.50 16 13 C -0.04 -1.15 5.56 29.84 0.17 -0.99 16 14 C 0.04 1.29 3.11 -10.80 -0.03 1.26 16 15 O -0.56 -21.44 13.83 -148.98 -2.06 -23.50 16 16 C -0.20 -5.30 10.13 30.62 0.31 -4.99 16 17 C -0.15 -3.73 10.20 30.62 0.31 -3.42 16 18 C -0.10 -4.41 8.40 22.22 0.19 -4.22 16 19 C -0.19 -9.71 8.70 22.73 0.20 -9.52 16 20 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 21 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 22 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 23 H 0.07 2.17 8.08 -2.39 -0.02 2.16 16 24 H 0.09 2.41 7.88 -2.38 -0.02 2.39 16 25 H 0.38 15.67 6.47 -74.06 -0.48 15.19 16 26 H 0.11 2.55 8.08 -2.39 -0.02 2.53 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.10 5.43 6.17 -2.91 -0.02 5.41 16 Total: -1.00 -58.03 266.73 2.88 -55.15 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.65 Total: 36.45 kcal Atomic # 6 Polarization: -67.61 SS G_CDS: 2.03 Total: -65.58 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.24 Total: -42.85 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -2.06 Total: -23.50 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -58.03 2.88 -55.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.596 kcal (2) G-P(sol) polarization free energy of solvation -58.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds