Wall clock time and date at job start Mon Mar 30 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46969 * 299.99913 * 3 2 1 6 6 H 1.48498 * 109.46921 * 59.99723 * 3 2 1 7 7 C 1.37873 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00450 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99939 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.20847 * 299.99840 * 9 7 2 11 11 C 1.52142 * 109.17373 * 59.34812 * 9 7 2 12 12 C 1.51436 * 113.44908 * 187.84892 * 11 9 7 13 13 O 1.43134 * 110.95107 * 294.53988 * 12 11 9 14 14 C 1.36160 * 115.61996 * 86.75877 * 13 12 11 15 15 C 1.38895 * 119.80025 * 108.26607 * 14 13 12 16 16 C 1.38174 * 119.66815 * 182.21814 * 15 14 13 17 17 C 1.38288 * 120.23086 * 359.96328 * 16 15 14 18 18 C 1.38377 * 120.07299 * 359.59765 * 17 16 15 19 19 C 1.37942 * 120.34053 * 289.71091 * 14 13 12 20 20 C 1.51656 * 119.45914 * 357.28486 * 19 14 13 21 21 H 0.96999 * 119.99900 * 0.02562 * 1 2 3 22 22 H 1.08993 * 108.68801 * 308.87203 * 11 9 7 23 23 H 1.08999 * 108.69028 * 66.82704 * 11 9 7 24 24 H 1.08998 * 109.17944 * 174.15928 * 12 11 9 25 25 H 1.08999 * 109.14064 * 54.89643 * 12 11 9 26 26 H 1.08000 * 120.16952 * 2.23791 * 15 14 13 27 27 H 1.08000 * 119.88155 * 179.97438 * 16 15 14 28 28 H 1.07999 * 119.95984 * 179.59857 * 17 16 15 29 29 H 1.08002 * 120.17539 * 180.11469 * 18 17 16 30 30 H 1.09000 * 109.59568 * 308.97908 * 20 19 14 31 31 H 1.09005 * 109.72946 * 188.58702 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5522 0.8917 11 6 0.3671 -2.5659 -1.2360 12 6 -0.5749 -3.7516 -1.2402 13 8 0.1518 -4.9823 -1.3172 14 6 0.5626 -5.4989 -0.1262 15 6 -0.0516 -6.6366 0.3813 16 6 0.3359 -7.1320 1.6116 17 6 1.3307 -6.4997 2.3348 18 6 1.9486 -5.3716 1.8245 19 6 1.5650 -4.8814 0.5926 20 6 2.2495 -3.6566 0.0170 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2227 -1.6511 -1.2935 23 1 1.0046 -2.6232 -2.1183 24 1 -1.2425 -3.6755 -2.0985 25 1 -1.1663 -3.7414 -0.3247 26 1 -0.8280 -7.1318 -0.1830 27 1 -0.1396 -8.0161 2.0097 28 1 1.6257 -6.8869 3.2988 29 1 2.7270 -4.8776 2.3870 30 1 2.5818 -3.8674 -0.9995 31 1 3.1076 -3.3905 0.6343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259598070.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:44 Heat of formation + Delta-G solvation = -26.422614 kcal Electronic energy + Delta-G solvation = -14670.934197 eV Core-core repulsion = 12302.891045 eV Total energy + Delta-G solvation = -2368.043152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.82414 -36.85907 -34.93377 -32.09637 -30.69528 -29.80042 -27.25525 -25.10608 -23.19909 -21.94793 -20.45133 -19.35968 -17.27285 -16.46541 -15.60529 -15.15679 -14.59454 -14.43830 -13.87112 -13.21276 -12.86283 -12.64340 -12.52681 -11.96101 -11.58163 -11.46188 -11.03333 -10.90188 -10.65997 -10.47513 -9.95740 -9.61544 -9.58662 -9.33835 -8.79587 -8.37929 -8.31331 -7.89579 -6.03898 -4.11492 1.68046 1.79895 3.26615 3.34959 3.38901 3.95023 4.39190 4.60205 5.23949 5.28332 5.31774 5.44159 5.75007 5.89605 5.93911 6.01850 6.15512 6.31631 6.41442 6.45670 6.54533 6.76010 6.86637 6.91196 7.09451 7.11755 7.24469 7.43736 7.64043 7.92797 8.02311 8.19903 8.39821 8.92860 9.53654 11.00789 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043577 B = 0.008626 C = 0.007743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.389592 B = 3245.138978 C = 3615.097815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.054 3.946 10 H 0.025 0.975 11 C -0.148 4.148 12 C 0.069 3.931 13 O -0.340 6.340 14 C 0.103 3.897 15 C -0.141 4.141 16 C -0.124 4.124 17 C -0.135 4.135 18 C -0.107 4.107 19 C -0.092 4.092 20 C -0.073 4.073 21 H 0.260 0.740 22 H 0.110 0.890 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.062 0.938 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 -9.617 1.611 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.036 3.964 10 H 0.043 0.957 11 C -0.186 4.186 12 C -0.005 4.005 13 O -0.257 6.257 14 C 0.059 3.941 15 C -0.159 4.159 16 C -0.142 4.142 17 C -0.153 4.153 18 C -0.125 4.125 19 C -0.093 4.093 20 C -0.111 4.111 21 H 0.070 0.930 22 H 0.128 0.872 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.081 0.919 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.223 -9.541 1.421 9.649 hybrid contribution 0.321 1.053 0.177 1.115 sum 0.098 -8.488 1.598 8.637 Atomic orbital electron populations 1.69828 1.05913 1.26400 1.50945 1.24985 0.94899 0.99171 0.95101 0.86526 0.80165 0.83688 0.77586 1.19756 1.20995 1.21033 1.21293 0.93000 0.90351 1.50092 0.92416 1.18417 0.92513 0.91303 0.94184 0.95661 1.21829 0.99247 0.97879 0.99651 1.22744 0.93859 0.82989 1.00909 1.86171 1.73415 1.40300 1.25848 1.18533 0.94409 0.94178 0.86972 1.21230 1.00458 0.98337 0.95883 1.20853 0.98423 1.00216 0.94740 1.21084 0.97724 0.96653 0.99873 1.20996 1.00248 0.96096 0.95199 1.20732 0.96304 0.97639 0.94606 1.21037 0.98718 0.91760 0.99559 0.92963 0.87183 0.94046 0.90191 0.93503 0.86027 0.86418 0.86495 0.85891 0.91902 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 11.21 55.43 0.62 -24.32 16 2 C 0.06 1.61 5.26 -17.82 -0.09 1.52 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -13.81 8.44 -34.44 -0.29 -14.10 16 8 H 0.06 1.55 7.65 -52.48 -0.40 1.14 16 9 C 0.05 1.35 1.90 -92.27 -0.18 1.18 16 10 H 0.03 0.70 7.90 -51.93 -0.41 0.29 16 11 C -0.15 -3.51 4.74 -27.96 -0.13 -3.64 16 12 C 0.07 1.41 6.48 36.37 0.24 1.65 16 13 O -0.34 -7.00 9.99 -20.25 -0.20 -7.20 16 14 C 0.10 2.02 5.61 -39.45 -0.22 1.79 16 15 C -0.14 -2.33 10.01 -39.36 -0.39 -2.72 16 16 C -0.12 -1.81 10.03 -39.59 -0.40 -2.21 16 17 C -0.14 -2.01 10.05 -39.51 -0.40 -2.41 16 18 C -0.11 -1.85 9.70 -39.61 -0.38 -2.23 16 19 C -0.09 -1.84 5.07 -104.34 -0.53 -2.37 16 20 C -0.07 -1.60 4.92 -27.48 -0.14 -1.74 16 21 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 22 H 0.11 2.87 5.70 -51.93 -0.30 2.57 16 23 H 0.04 0.98 8.01 -51.93 -0.42 0.56 16 24 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.05 0.97 7.90 -51.93 -0.41 0.56 16 26 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.92 7.99 -52.49 -0.42 1.51 16 30 H 0.06 1.38 7.88 -51.93 -0.41 0.97 16 31 H 0.06 1.33 7.64 -51.93 -0.40 0.93 16 LS Contribution 255.54 15.07 3.85 3.85 Total: -1.00 -28.42 255.54 -7.65 -36.07 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.98 Total: 0.92 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.91 Total: -25.29 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.62 Total: -24.32 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.20 Total: -7.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.42 -7.65 -36.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598070.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.645 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds