Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38015 * 119.89155 * 2 1 4 4 C 1.38251 * 119.95525 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.98578 * 359.90055 * 4 3 2 6 6 C 1.38458 * 120.31390 * 0.29837 * 5 4 3 7 7 C 1.38416 * 119.83589 * 359.59389 * 6 5 4 8 8 O 1.35841 * 121.79314 * 179.69062 * 7 6 5 9 9 C 1.42506 * 118.00846 * 16.88425 * 8 7 6 10 10 C 1.53408 * 108.71111 * 311.45927 * 9 8 7 11 11 H 1.09001 * 109.73225 * 304.56889 * 10 9 8 12 12 C 1.50701 * 109.69866 * 183.99192 * 10 9 8 13 13 H 1.07994 * 120.00408 * 241.15597 * 12 10 9 14 14 C 1.37879 * 119.99466 * 61.15611 * 12 10 9 15 15 N 1.31506 * 120.00571 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99755 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47092 * 89.99742 * 16 14 12 18 18 H 1.48495 * 109.47143 * 209.99850 * 16 14 12 19 19 H 1.48505 * 109.46942 * 330.00072 * 16 14 12 20 20 C 1.50760 * 118.76636 * 180.09532 * 6 5 4 21 21 H 1.09007 * 109.47192 * 90.00308 * 1 2 3 22 22 H 1.09006 * 109.47131 * 210.00077 * 1 2 3 23 23 H 1.09000 * 109.47224 * 330.00556 * 1 2 3 24 24 H 1.07997 * 120.02243 * 359.96335 * 3 2 1 25 25 H 1.08003 * 120.00161 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.84014 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.84151 * 191.45225 * 9 8 7 28 28 H 1.08999 * 109.24694 * 71.11645 * 9 8 7 29 29 H 0.97006 * 120.00788 * 179.97438 * 15 14 12 30 30 H 1.09003 * 109.44079 * 317.92771 * 20 6 5 31 31 H 1.09008 * 109.43450 * 77.84315 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1966 0.0000 4 6 3.5773 1.1981 0.0005 5 6 4.2691 0.0023 0.0031 6 6 3.5844 -1.2012 -0.0010 7 6 2.2003 -1.2060 0.0007 8 8 1.4886 -2.3630 -0.0094 9 6 2.1640 -3.5672 0.3437 10 6 3.4786 -3.6431 -0.4434 11 1 3.2740 -3.5579 -1.5106 12 6 4.1648 -4.9547 -0.1609 13 1 5.1444 -4.9648 0.2936 14 6 3.5419 -6.1419 -0.4827 15 7 2.3488 -6.1297 -1.0357 16 14 4.3927 -7.7678 -0.1332 17 1 4.0294 -8.2338 1.2291 18 1 3.9612 -8.7772 -1.1332 19 1 5.8640 -7.5847 -0.2177 20 6 4.3743 -2.4853 0.0042 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6534 2.1310 -0.0006 25 1 4.1163 2.1340 0.0001 26 1 5.3491 0.0062 0.0040 27 1 1.5398 -4.4268 0.0993 28 1 2.3762 -3.5600 1.4128 29 1 1.9106 -6.9649 -1.2625 30 1 5.2186 -2.3946 -0.6792 31 1 4.7424 -2.6806 1.0116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = -34.871340 kcal Electronic energy + Delta-G solvation = -14527.276890 eV Core-core repulsion = 12158.867374 eV Total energy + Delta-G solvation = -2368.409516 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.92438 -36.87046 -34.45534 -32.66900 -30.88333 -29.59526 -26.41300 -25.22264 -24.61511 -22.15256 -20.64616 -18.87751 -16.89152 -16.58648 -15.70062 -14.89169 -14.51375 -14.13865 -13.57976 -13.15115 -12.93234 -12.89678 -12.39280 -12.30692 -11.93902 -11.79002 -11.05026 -11.03183 -10.93855 -10.65944 -10.41439 -10.16451 -9.73526 -9.36465 -8.94319 -8.52345 -8.07658 -7.38662 -6.16735 -4.23643 1.80193 1.99144 3.23059 3.30471 3.33419 4.19834 4.28404 4.40984 5.14440 5.26480 5.30339 5.48075 5.65590 5.82895 6.00552 6.03802 6.05879 6.26239 6.28255 6.30553 6.58510 6.64147 6.69710 6.85238 6.94749 6.96774 7.19484 7.33190 7.46093 7.66288 7.81831 8.15131 8.46123 8.80511 9.42458 10.90748 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050385 B = 0.008046 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.588905 B = 3479.168514 C = 3948.881593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.132 4.132 3 C -0.101 4.101 4 C -0.166 4.166 5 C -0.097 4.097 6 C -0.149 4.149 7 C 0.146 3.854 8 O -0.323 6.323 9 C 0.061 3.939 10 C 0.017 3.983 11 H 0.040 0.960 12 C -0.517 4.517 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.073 4.073 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.134 0.866 28 H 0.035 0.965 29 H 0.265 0.735 30 H 0.065 0.935 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 10.038 2.358 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C -0.119 4.119 4 C -0.184 4.184 5 C -0.115 4.115 6 C -0.150 4.150 7 C 0.100 3.900 8 O -0.236 6.236 9 C -0.013 4.013 10 C -0.002 4.002 11 H 0.058 0.942 12 C -0.555 4.555 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.110 4.110 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.151 0.849 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.819 9.853 2.243 10.138 hybrid contribution 0.747 -0.989 0.186 1.253 sum -0.073 8.864 2.429 9.191 Atomic orbital electron populations 1.20533 0.91169 1.02066 1.01807 1.19390 0.96184 0.90852 1.06866 1.20654 0.94073 0.96306 1.00895 1.20815 0.94175 0.97452 1.05972 1.20879 0.99294 0.91611 0.99692 1.20268 0.93048 0.96868 1.04834 1.18703 0.89746 0.86686 0.94898 1.85876 1.40013 1.14645 1.83115 1.23533 0.97993 0.82686 0.97071 1.19284 0.91488 0.92762 0.96639 0.94168 1.21063 1.03393 0.89835 1.41185 0.92029 1.25048 0.95024 0.99500 0.94519 1.69828 1.13906 1.27405 1.41722 0.86492 0.79887 0.82987 0.78105 1.20508 1.21052 1.19773 1.20673 0.97939 0.91148 1.01219 0.91907 0.91214 0.92514 0.86446 0.86825 0.86592 0.84897 0.94669 0.92489 0.91599 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.75 36.01 0.35 -1.15 16 2 C -0.13 -2.36 5.90 -104.38 -0.62 -2.98 16 3 C -0.10 -1.57 9.69 -39.66 -0.38 -1.95 16 4 C -0.17 -2.54 10.04 -39.61 -0.40 -2.93 16 5 C -0.10 -1.66 9.67 -39.53 -0.38 -2.04 16 6 C -0.15 -3.03 5.75 -104.45 -0.60 -3.63 16 7 C 0.15 3.07 6.46 -39.19 -0.25 2.82 16 8 O -0.32 -7.44 9.19 -19.24 -0.18 -7.62 16 9 C 0.06 1.49 6.13 37.37 0.23 1.72 16 10 C 0.02 0.42 2.32 -91.52 -0.21 0.21 16 11 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 12 C -0.52 -13.81 8.53 -34.44 -0.29 -14.10 16 13 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -24.77 11.40 55.43 0.63 -24.14 16 16 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.07 -1.57 5.14 -27.82 -0.14 -1.71 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.07 1.12 7.46 -51.93 -0.39 0.74 16 23 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 24 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 25 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.13 3.51 6.12 -51.93 -0.32 3.19 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.39 8.09 -51.92 -0.42 0.97 16 LS Contribution 258.67 15.07 3.90 3.90 Total: -1.00 -27.93 258.67 -7.51 -35.44 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.05 Total: 1.00 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.80 Total: -24.20 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.63 Total: -24.14 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.18 Total: -7.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.93 -7.51 -35.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.572 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds