Wall clock time and date at job start Mon Mar 30 2020 02:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47239 * 240.00431 * 3 2 1 5 5 H 1.48496 * 109.46770 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46816 * 120.00373 * 3 2 1 7 7 C 1.37881 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99339 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.38093 * 119.85424 * 264.98130 * 10 9 7 12 12 C 1.38214 * 119.89816 * 180.02562 * 11 10 9 13 13 C 1.38105 * 119.86523 * 0.11052 * 12 11 10 14 14 C 1.38549 * 120.27669 * 0.02562 * 13 12 11 15 15 C 1.37955 * 119.87981 * 359.76189 * 14 13 12 16 16 C 1.50654 * 121.49611 * 180.58238 * 15 14 13 17 17 O 1.42730 * 110.24955 * 343.62018 * 16 15 14 18 18 C 1.43205 * 113.14207 * 51.86978 * 17 16 15 19 19 C 1.50747 * 118.78028 * 179.46439 * 14 13 12 20 20 H 0.97003 * 120.00655 * 359.97438 * 1 2 3 21 21 H 1.08990 * 109.47709 * 60.00214 * 9 7 2 22 22 H 1.09000 * 109.47414 * 299.99669 * 9 7 2 23 23 H 1.08007 * 120.04756 * 0.02562 * 11 10 9 24 24 H 1.07999 * 120.06697 * 180.08607 * 12 11 10 25 25 H 1.08001 * 119.86601 * 180.02562 * 13 12 11 26 26 H 1.09004 * 109.33972 * 103.85630 * 16 15 14 27 27 H 1.09001 * 109.34549 * 223.38137 * 16 15 14 28 28 H 1.09001 * 109.62609 * 49.07433 * 18 17 16 29 29 H 1.08993 * 109.63181 * 169.46756 * 18 17 16 30 30 H 1.08997 * 109.41691 * 283.18741 * 19 14 13 31 31 H 1.08993 * 109.41796 * 43.00527 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 6 2.5964 -4.2347 -1.1954 12 6 3.4940 -5.2857 -1.1976 13 6 4.0199 -5.7434 -0.0054 14 6 3.6509 -5.1539 1.1929 15 6 2.7584 -4.1020 1.1952 16 6 2.3421 -3.4258 2.4755 17 8 2.6763 -4.2429 3.5970 18 6 4.0443 -4.6664 3.5971 19 6 4.2362 -5.6883 2.4751 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6247 -2.5571 0.8897 23 1 2.1819 -3.8754 -2.1258 24 1 3.7833 -5.7482 -2.1297 25 1 4.7216 -6.5644 -0.0072 26 1 2.8552 -2.4678 2.5611 27 1 1.2655 -3.2559 2.4606 28 1 4.6934 -3.8077 3.4253 29 1 4.2864 -5.1223 4.5570 30 1 3.7347 -6.6184 2.7424 31 1 5.3004 -5.8783 2.3362 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259729196.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:49 Heat of formation + Delta-G solvation = -56.131029 kcal Electronic energy + Delta-G solvation = -14482.025968 eV Core-core repulsion = 12112.694563 eV Total energy + Delta-G solvation = -2369.331406 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19258 -38.48995 -35.76551 -34.01752 -32.81962 -31.00938 -28.85206 -26.44661 -25.22161 -24.69910 -21.53546 -20.89927 -18.54994 -17.70130 -17.38442 -16.70544 -16.52227 -16.04464 -15.15658 -15.05111 -14.55374 -14.30553 -14.15539 -13.61068 -13.37539 -13.14922 -12.88171 -12.63126 -12.49495 -12.29856 -12.24690 -11.59938 -11.47752 -11.29288 -10.61790 -10.55067 -9.41992 -9.33132 -8.21584 -6.34636 0.49551 0.59906 1.37976 1.39948 1.48326 2.37649 2.88894 2.98881 3.09107 3.81696 3.87733 3.99757 4.22512 4.30219 4.36470 4.45375 4.56300 4.65073 4.74135 4.83251 4.98795 5.03402 5.13455 5.19706 5.35413 5.38158 5.63921 5.68084 5.74854 5.96502 6.10947 6.21545 6.28106 6.76532 7.33514 8.87491 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.009467 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.150143 B = 2957.021440 C = 3444.236454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.056 3.944 10 C -0.061 4.061 11 C -0.147 4.147 12 C -0.113 4.113 13 C -0.137 4.137 14 C -0.088 4.088 15 C -0.141 4.141 16 C 0.116 3.884 17 O -0.396 6.396 18 C 0.047 3.953 19 C -0.105 4.105 20 H 0.266 0.734 21 H 0.000 1.000 22 H 0.010 0.990 23 H 0.113 0.887 24 H 0.149 0.851 25 H 0.155 0.845 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.951 -10.752 3.261 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.561 4.561 8 H 0.069 0.931 9 C 0.019 3.981 10 C -0.061 4.061 11 C -0.165 4.165 12 C -0.131 4.131 13 C -0.154 4.154 14 C -0.088 4.088 15 C -0.142 4.142 16 C 0.040 3.960 17 O -0.315 6.315 18 C -0.029 4.029 19 C -0.141 4.141 20 H 0.075 0.925 21 H 0.019 0.981 22 H 0.028 0.972 23 H 0.131 0.869 24 H 0.167 0.833 25 H 0.172 0.828 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.111 0.889 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.665 -10.689 3.410 14.808 hybrid contribution -0.111 1.360 -0.534 1.465 sum 9.554 -9.328 2.876 13.659 Atomic orbital electron populations 1.70060 1.07586 1.28015 1.51049 1.25873 0.95716 1.02894 0.94589 0.85562 0.78394 0.78390 0.79131 1.19371 1.20505 1.19264 1.21202 0.92762 0.90974 1.51182 0.93091 1.18130 0.92883 0.91116 0.95945 1.20318 0.97039 0.95453 0.93272 1.21128 1.00288 0.98030 0.97061 1.21362 0.96295 0.95994 0.99422 1.21267 1.01747 1.01332 0.91088 1.19864 0.96566 0.95268 0.97069 1.20115 1.00093 0.98732 0.95229 1.21148 1.00465 0.91826 0.82557 1.87992 1.29428 1.69736 1.44349 1.22911 0.82225 0.97164 1.00576 1.21136 1.02640 0.99438 0.90932 0.92528 0.98129 0.97197 0.86864 0.83327 0.82788 0.92827 0.89600 0.93115 0.85480 0.88861 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.28 21.45 0.28 -55.63 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.52 -29.91 9.05 25.60 0.23 -29.68 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.06 3.04 4.57 29.10 0.13 3.17 16 10 C -0.06 -2.78 5.07 -19.81 -0.10 -2.88 16 11 C -0.15 -5.86 9.67 22.23 0.21 -5.65 16 12 C -0.11 -3.52 10.05 22.23 0.22 -3.29 16 13 C -0.14 -3.91 9.67 22.31 0.22 -3.69 16 14 C -0.09 -2.87 5.78 -19.84 -0.11 -2.99 16 15 C -0.14 -5.82 5.80 -19.86 -0.12 -5.94 16 16 C 0.12 4.84 5.92 71.22 0.42 5.26 16 17 O -0.40 -14.21 10.80 -148.98 -1.61 -15.82 16 18 C 0.05 1.23 6.85 71.97 0.49 1.73 16 19 C -0.10 -2.51 6.01 29.85 0.18 -2.33 16 20 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 21 H 0.00 0.02 8.05 -2.39 -0.02 0.00 16 22 H 0.01 0.57 6.28 -2.39 -0.01 0.55 16 23 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 24 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 25 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 26 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.09 3.89 6.50 -2.39 -0.02 3.87 16 28 H 0.05 1.34 8.07 -2.39 -0.02 1.32 16 29 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.32 260.53 4.06 -62.27 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.11 Total: 8.18 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 2.24 Total: -45.38 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.28 Total: -55.63 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -1.61 Total: -15.82 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.32 4.06 -62.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729196.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.134 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds