Wall clock time and date at job start Mon Mar 30 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00342 * 2 1 4 4 H 1.48498 * 109.47561 * 264.83890 * 3 2 1 5 5 H 1.48506 * 109.46901 * 24.83812 * 3 2 1 6 6 H 1.48503 * 109.47207 * 144.83661 * 3 2 1 7 7 C 1.37878 * 119.99416 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00533 * 6.44534 * 7 2 1 9 9 C 1.50708 * 119.99554 * 186.44538 * 7 2 1 10 10 H 1.08999 * 109.25077 * 33.39133 * 9 7 2 11 11 C 1.52741 * 109.24899 * 273.92356 * 9 7 2 12 12 C 1.53331 * 108.37581 * 188.61967 * 11 9 7 13 13 C 1.52732 * 108.37558 * 69.85826 * 12 11 9 14 14 C 1.50622 * 110.59227 * 308.93332 * 13 12 11 15 15 C 1.39402 * 117.75252 * 197.47314 * 14 13 12 16 16 O 1.35899 * 119.78432 * 0.30305 * 15 14 13 17 17 C 1.38434 * 120.42820 * 180.28656 * 15 14 13 18 18 C 1.38178 * 119.70720 * 0.08218 * 17 15 14 19 19 C 1.37953 * 119.83113 * 0.16437 * 18 17 15 20 20 C 1.37568 * 122.59524 * 17.69289 * 14 13 12 21 21 H 0.96997 * 119.99891 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.68123 * 68.89925 * 11 9 7 23 23 H 1.08998 * 109.68066 * 308.33504 * 11 9 7 24 24 H 1.09006 * 109.68152 * 310.13717 * 12 11 9 25 25 H 1.08997 * 109.70906 * 189.60155 * 12 11 9 26 26 H 1.08996 * 109.25049 * 188.64648 * 13 12 11 27 27 H 1.08993 * 109.22125 * 69.20350 * 13 12 11 28 28 H 0.96698 * 113.99873 * 269.97746 * 16 15 14 29 29 H 1.07999 * 120.14711 * 180.11365 * 17 15 14 30 30 H 1.07996 * 120.08382 * 179.87908 * 18 17 15 31 31 H 1.08005 * 119.67031 * 179.67084 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6058 1.9834 -1.3943 5 1 1.3963 2.6816 0.5881 6 1 3.4880 1.4740 0.8063 7 6 2.0044 -1.1941 -0.0005 8 1 1.4695 -2.1264 -0.1059 9 6 3.5043 -1.1984 0.1460 10 1 3.8046 -0.3736 0.7923 11 6 4.1451 -1.0199 -1.2290 12 6 5.6558 -1.2428 -1.0909 13 6 5.9004 -2.7243 -0.8116 14 6 5.0422 -3.1964 0.3326 15 6 5.3944 -4.3913 0.9582 16 8 6.4848 -5.0810 0.5313 17 6 4.6409 -4.8798 2.0118 18 6 3.5318 -4.1779 2.4437 19 6 3.1809 -2.9981 1.8207 20 6 3.9389 -2.4996 0.7682 21 1 -0.4850 0.8400 -0.0004 22 1 3.9548 -0.0108 -1.5945 23 1 3.7288 -1.7479 -1.9253 24 1 6.0411 -0.6449 -0.2648 25 1 6.1558 -0.9560 -2.0160 26 1 6.9501 -2.8739 -0.5591 27 1 5.6596 -3.3021 -1.7039 28 1 6.2944 -5.7281 -0.1615 29 1 4.9190 -5.8051 2.4944 30 1 2.9385 -4.5544 3.2638 31 1 2.3103 -2.4544 2.1569 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755234.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:34 Heat of formation + Delta-G solvation = -57.593062 kcal Electronic energy + Delta-G solvation = -14680.479614 eV Core-core repulsion = 12311.084810 eV Total energy + Delta-G solvation = -2369.394804 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.16259 -38.32294 -36.59413 -34.86495 -32.56569 -31.06431 -29.40582 -26.82794 -23.96114 -23.54198 -22.37895 -20.25505 -19.03365 -18.73972 -17.00694 -16.57901 -16.30402 -16.23266 -15.10859 -14.88211 -14.64942 -14.53058 -13.85182 -13.49995 -13.23090 -12.93096 -12.87841 -12.61306 -12.30849 -12.05301 -11.88346 -11.70909 -11.38998 -11.11173 -10.86701 -10.54744 -9.35539 -9.28471 -8.28720 -6.30591 0.45729 0.56009 1.33592 1.35160 1.44310 2.33764 2.82836 3.04752 3.44174 3.90042 3.95866 4.20832 4.28999 4.40147 4.53249 4.60874 4.66303 4.80661 4.87323 5.04500 5.09241 5.14336 5.20586 5.33429 5.42338 5.53296 5.58812 5.65625 5.75727 6.03855 6.08613 6.34930 6.74321 6.95645 7.32432 8.87690 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.010679 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.306296 B = 2621.395296 C = 3184.116811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.015 3.985 3 Si 0.932 3.068 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.247 1.247 7 C -0.499 4.499 8 H 0.032 0.968 9 C 0.037 3.963 10 H 0.041 0.959 11 C -0.112 4.112 12 C -0.119 4.119 13 C -0.064 4.064 14 C -0.125 4.125 15 C 0.094 3.906 16 O -0.499 6.499 17 C -0.158 4.158 18 C -0.116 4.116 19 C -0.133 4.133 20 C -0.049 4.049 21 H 0.265 0.735 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.404 0.596 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.809 -6.833 0.157 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.182 4.182 3 Si 0.757 3.243 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.171 1.171 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.018 3.982 10 H 0.059 0.941 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.101 4.101 14 C -0.126 4.126 15 C 0.050 3.950 16 O -0.312 6.312 17 C -0.177 4.177 18 C -0.134 4.134 19 C -0.152 4.152 20 C -0.049 4.049 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.262 0.738 29 H 0.167 0.833 30 H 0.160 0.840 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.954 -6.392 0.560 14.456 hybrid contribution -0.894 0.598 -0.285 1.113 sum 12.060 -5.793 0.276 13.383 Atomic orbital electron populations 1.70050 1.08075 1.27933 1.52747 1.25822 0.95356 1.02629 0.94388 0.85995 0.79431 0.79134 0.79734 1.18574 1.21695 1.17058 1.21087 0.90824 0.92939 1.48881 0.94954 1.18264 0.94112 0.91960 0.93814 0.94110 1.21746 0.95160 1.00156 0.97947 1.21627 0.95615 0.96240 1.02112 1.20273 0.98604 0.95963 0.95238 1.20200 0.96481 0.96344 0.99576 1.18431 0.88396 0.92325 0.95861 1.84711 1.30198 1.56100 1.60161 1.21454 0.95479 1.01748 0.98985 1.21165 0.97325 0.94621 1.00300 1.21385 0.99629 0.97223 0.96916 1.19938 0.93157 0.96824 0.95026 0.92594 0.93607 0.92960 0.92534 0.89567 0.89484 0.90137 0.73770 0.83337 0.84032 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 2 C 0.02 0.87 5.47 84.65 0.46 1.34 16 3 Si 0.93 43.86 25.90 68.60 1.78 45.63 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.25 -10.87 6.12 99.48 0.61 -10.26 16 7 C -0.50 -28.17 7.52 25.60 0.19 -27.98 16 8 H 0.03 2.05 7.90 -2.91 -0.02 2.02 16 9 C 0.04 1.74 1.76 -12.39 -0.02 1.71 16 10 H 0.04 1.98 5.67 -2.39 -0.01 1.97 16 11 C -0.11 -4.55 5.03 30.62 0.15 -4.40 16 12 C -0.12 -3.75 5.98 30.62 0.18 -3.56 16 13 C -0.06 -1.90 5.27 29.73 0.16 -1.74 16 14 C -0.13 -4.48 5.75 -19.77 -0.11 -4.59 16 15 C 0.09 2.93 6.66 22.60 0.15 3.08 16 16 O -0.50 -12.27 12.53 -92.41 -1.16 -13.43 16 17 C -0.16 -4.72 9.98 22.30 0.22 -4.50 16 18 C -0.12 -3.90 10.04 22.19 0.22 -3.68 16 19 C -0.13 -5.61 8.94 22.38 0.20 -5.41 16 20 C -0.05 -2.10 5.42 -19.87 -0.11 -2.21 16 21 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 22 H 0.05 1.87 6.36 -2.39 -0.02 1.86 16 23 H 0.05 2.17 8.08 -2.39 -0.02 2.16 16 24 H 0.06 1.80 8.10 -2.38 -0.02 1.79 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.09 2.29 7.76 -2.39 -0.02 2.27 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.40 6.04 9.06 -74.06 -0.67 5.37 16 29 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.10 4.89 7.25 -2.91 -0.02 4.87 16 Total: -1.00 -66.72 251.43 2.98 -63.74 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.36 Total: 14.54 kcal Atomic # 6 Polarization: -53.65 SS G_CDS: 1.70 Total: -51.94 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.30 Total: -58.54 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.16 Total: -13.43 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.78 Total: 45.63 kcal Total: -66.72 2.98 -63.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755234.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.144 kcal (2) G-P(sol) polarization free energy of solvation -66.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds