Wall clock time and date at job start Mon Mar 30 2020 03:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38176 * 120.02666 * 2 1 4 4 C 1.38242 * 120.05409 * 180.25453 * 3 2 1 5 5 C 1.38290 * 120.11423 * 359.76764 * 4 3 2 6 6 C 1.50693 * 119.97289 * 179.97438 * 5 4 3 7 7 C 1.50701 * 115.55182 * 234.29894 * 6 5 4 8 8 H 1.07996 * 119.99515 * 263.11716 * 7 6 5 9 9 C 1.37875 * 120.00165 * 83.11152 * 7 6 5 10 10 N 1.31523 * 119.99980 * 353.15910 * 9 7 6 11 11 Si 1.86803 * 120.00193 * 173.15983 * 9 7 6 12 12 H 1.48496 * 109.47127 * 90.00017 * 11 9 7 13 13 H 1.48501 * 109.47013 * 210.00251 * 11 9 7 14 14 H 1.48500 * 109.46859 * 329.99835 * 11 9 7 15 15 C 1.53004 * 117.50296 * 88.62354 * 6 5 4 16 16 C 1.53006 * 117.49907 * 19.96520 * 6 5 4 17 17 C 1.38119 * 120.05547 * 359.97438 * 5 4 3 18 18 C 1.38705 * 120.03338 * 179.77011 * 2 1 3 19 19 O 1.35902 * 120.05414 * 359.97438 * 18 2 1 20 20 H 1.08992 * 109.47018 * 270.22700 * 1 2 3 21 21 H 1.08994 * 109.47267 * 30.23673 * 1 2 3 22 22 H 1.09010 * 109.46725 * 150.22912 * 1 2 3 23 23 H 1.07993 * 119.96911 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.93876 * 179.74829 * 4 3 2 25 25 H 0.96996 * 119.99658 * 175.01888 * 10 9 7 26 26 H 1.09003 * 117.49216 * 0.02562 * 15 6 5 27 27 H 1.09001 * 117.49472 * 145.01757 * 15 6 5 28 28 H 1.08998 * 117.49753 * 214.98131 * 16 6 5 29 29 H 1.08997 * 117.49992 * 0.02562 * 16 6 5 30 30 H 1.07997 * 120.03114 * 179.97438 * 17 5 4 31 31 H 0.96697 * 114.00189 * 269.72914 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0053 5 6 4.2753 0.0011 -0.0058 6 6 5.7822 0.0055 -0.0122 7 6 6.4299 -0.7882 -1.1174 8 1 6.7676 -1.7970 -0.9312 9 6 6.5911 -0.2267 -2.3663 10 7 6.0615 0.9474 -2.6327 11 14 7.5616 -1.1334 -3.6799 12 1 6.6450 -2.0014 -4.4618 13 1 8.2057 -0.1496 -4.5869 14 1 8.6056 -1.9697 -3.0351 15 6 6.4944 0.0430 1.3415 16 6 6.4868 1.2842 0.4456 17 6 3.5888 -1.1974 -0.0004 18 6 2.2012 -1.2008 0.0048 19 8 1.5235 -2.3788 0.0101 20 1 -0.3633 0.0041 1.0276 21 1 -0.3633 0.8878 -0.5175 22 1 -0.3633 -0.8921 -0.5103 23 1 1.6584 2.1315 -0.0004 24 1 4.1194 2.1331 -0.0094 25 1 6.2350 1.3752 -3.4858 26 1 5.8728 0.0640 2.2367 27 1 7.4315 -0.5063 1.4325 28 1 7.4190 1.5510 -0.0523 29 1 5.8605 2.1220 0.7518 30 1 4.1315 -2.1311 -0.0012 31 1 1.3313 -2.7180 0.8949 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259860536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:08 Heat of formation + Delta-G solvation = -21.850476 kcal Electronic energy + Delta-G solvation = -14432.973056 eV Core-core repulsion = 12065.128167 eV Total energy + Delta-G solvation = -2367.844889 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.78678 -38.61809 -36.77719 -34.04442 -33.00658 -30.68312 -28.00624 -27.18553 -23.72344 -23.02788 -22.49621 -21.06762 -18.95617 -17.88663 -16.91530 -16.56321 -16.44203 -15.85486 -15.40355 -14.86304 -14.37665 -14.05343 -13.62532 -13.29255 -13.05589 -12.93411 -12.88661 -12.62269 -12.37814 -12.21067 -11.85738 -11.82496 -11.11389 -10.96547 -10.45062 -10.16376 -9.48128 -8.98655 -8.11532 -6.24561 0.54337 0.64418 1.38359 1.40360 1.49423 2.40631 2.89846 3.16978 3.38732 3.57513 4.07533 4.14660 4.31331 4.44916 4.57671 4.67991 4.72457 4.88285 4.92223 4.96439 5.00883 5.17257 5.26441 5.27261 5.48688 5.59863 5.69218 5.72782 5.82975 6.03156 6.21967 6.40244 6.80164 6.98383 7.43376 8.95067 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.029248 B = 0.009834 C = 0.008931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.085933 B = 2846.693021 C = 3134.263658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.142 4.142 3 C -0.110 4.110 4 C -0.135 4.135 5 C -0.006 4.006 6 C 0.041 3.959 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.029 3.971 10 N -0.895 5.895 11 Si 0.945 3.055 12 H -0.282 1.282 13 H -0.280 1.280 14 H -0.267 1.267 15 C -0.180 4.180 16 C -0.159 4.159 17 C -0.153 4.153 18 C 0.092 3.908 19 O -0.503 6.503 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.112 0.888 25 H 0.259 0.741 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 -0.739 6.854 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C -0.128 4.128 4 C -0.153 4.153 5 C -0.007 4.007 6 C 0.041 3.959 7 C -0.548 4.548 8 H 0.070 0.930 9 C -0.172 4.172 10 N -0.532 5.532 11 Si 0.771 3.229 12 H -0.208 1.208 13 H -0.206 1.206 14 H -0.192 1.192 15 C -0.217 4.217 16 C -0.196 4.196 17 C -0.172 4.172 18 C 0.048 3.952 19 O -0.315 6.315 20 H 0.102 0.898 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.162 0.838 24 H 0.130 0.870 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -8.396 -0.577 6.080 10.382 hybrid contribution 0.959 -0.412 -0.543 1.176 sum -7.437 -0.989 5.537 9.324 Atomic orbital electron populations 1.20602 0.88613 1.03049 1.03047 1.20349 0.97987 0.91885 1.04047 1.21111 0.93344 0.98070 1.00281 1.21129 0.94543 0.97734 1.01860 1.19590 0.95375 0.92331 0.93371 1.17786 0.87323 0.98097 0.92734 1.20638 1.39332 0.99999 0.94782 0.93045 1.25634 0.95890 0.96088 0.99631 1.70133 1.42335 1.16838 1.23866 0.85774 0.79134 0.78658 0.79380 1.20789 1.20568 1.19158 1.23028 1.02170 1.02460 0.94008 1.22524 1.01848 0.91623 1.03592 1.21183 0.93587 0.98350 1.04065 1.18292 0.89110 0.85556 1.02256 1.84729 1.76122 1.35920 1.34765 0.89794 0.90788 0.91588 0.83823 0.86992 0.93189 0.89331 0.89893 0.91952 0.90179 0.87354 0.73996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 9.79 71.24 0.70 -1.66 16 2 C -0.14 -4.80 5.89 -19.77 -0.12 -4.91 16 3 C -0.11 -3.91 9.70 22.26 0.22 -3.69 16 4 C -0.13 -5.73 9.30 22.28 0.21 -5.53 16 5 C -0.01 -0.29 5.24 -19.88 -0.10 -0.39 16 6 C 0.04 2.04 1.58 -53.67 -0.08 1.95 16 7 C -0.51 -28.26 8.54 25.60 0.22 -28.04 16 8 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 9 C 0.03 1.62 5.40 84.65 0.46 2.07 16 10 N -0.90 -51.49 13.03 21.45 0.28 -51.21 16 11 Si 0.94 44.13 29.55 68.60 2.03 46.15 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C -0.18 -7.68 9.94 30.62 0.30 -7.37 16 16 C -0.16 -7.35 9.12 30.62 0.28 -7.07 16 17 C -0.15 -6.75 9.39 22.37 0.21 -6.54 16 18 C 0.09 3.45 6.68 22.51 0.15 3.60 16 19 O -0.50 -15.77 12.55 -92.45 -1.16 -16.93 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.07 1.60 8.09 -2.39 -0.02 1.59 16 22 H 0.07 1.62 7.53 -2.38 -0.02 1.61 16 23 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 24 H 0.11 4.80 6.41 -2.91 -0.02 4.78 16 25 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 26 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 27 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 28 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.08 3.44 6.56 -2.39 -0.02 3.42 16 30 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 31 H 0.40 8.06 9.06 -74.06 -0.67 7.39 16 Total: -1.00 -63.93 269.50 4.04 -59.89 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.46 Total: 19.68 kcal Atomic # 6 Polarization: -60.02 SS G_CDS: 2.43 Total: -57.58 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.28 Total: -51.21 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -1.16 Total: -16.93 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.93 4.04 -59.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259860536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.038 kcal (2) G-P(sol) polarization free energy of solvation -63.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds