Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.26696 * 52.92989 * 10 9 7 12 12 C 1.54344 * 110.30056 * 174.99829 * 10 9 7 13 13 C 1.54334 * 102.39519 * 92.55983 * 12 10 9 14 14 C 1.51377 * 105.17285 * 26.36304 * 13 12 10 15 15 C 1.38414 * 130.33826 * 162.82382 * 14 13 12 16 16 C 1.38604 * 120.17378 * 179.97438 * 15 14 13 17 17 O 1.35895 * 120.09352 * 180.02562 * 16 15 14 18 18 C 1.38746 * 119.81185 * 0.02562 * 16 15 14 19 19 C 1.38009 * 119.88272 * 359.97438 * 18 16 15 20 20 C 1.38259 * 109.75560 * 342.80274 * 14 13 12 21 21 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 23 23 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 24 24 H 1.08996 * 110.81603 * 210.78354 * 12 10 9 25 25 H 1.08998 * 110.82189 * 334.33430 * 12 10 9 26 26 H 1.08994 * 110.30527 * 145.28904 * 13 12 10 27 27 H 1.09000 * 110.30270 * 267.34600 * 13 12 10 28 28 H 1.08002 * 119.91804 * 359.97438 * 15 14 13 29 29 H 0.96705 * 114.00265 * 90.00025 * 17 16 15 30 30 H 1.08005 * 120.06287 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.85453 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9592 -3.5485 0.8153 12 6 1.4973 -5.0062 0.1257 13 6 1.2957 -5.4129 -1.3494 14 6 2.4231 -4.7407 -2.1034 15 6 2.9298 -4.9902 -3.3671 16 6 3.9828 -4.2340 -3.8573 17 8 4.4786 -4.4800 -5.0984 18 6 4.5293 -3.2250 -3.0773 19 6 4.0220 -2.9785 -1.8177 20 6 2.9691 -3.7344 -1.3282 21 1 -0.4850 -0.8401 0.0004 22 1 0.6247 -2.5570 0.8897 23 1 0.6242 -2.5567 -0.8903 24 1 2.1075 -5.7413 0.6503 25 1 0.5379 -4.8702 0.6247 26 1 1.3623 -6.4956 -1.4557 27 1 0.3314 -5.0565 -1.7116 28 1 2.5035 -5.7763 -3.9728 29 1 4.0480 -3.9746 -5.8014 30 1 5.3502 -2.6335 -3.4551 31 1 4.4480 -2.1933 -1.2107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259878901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = -40.551989 kcal Electronic energy + Delta-G solvation = -14380.323884 eV Core-core repulsion = 12011.668036 eV Total energy + Delta-G solvation = -2368.655848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93742 -37.65275 -34.58923 -33.18189 -31.03951 -28.35755 -28.01284 -25.14641 -22.62717 -22.20044 -20.68986 -19.46754 -17.61554 -16.83013 -15.79000 -15.09041 -14.71228 -14.46482 -13.74544 -13.41145 -13.22421 -12.71610 -12.20571 -12.05389 -11.68327 -11.42731 -11.22049 -10.92436 -10.74440 -10.50252 -10.17911 -10.11558 -9.87967 -9.75633 -8.51102 -8.37964 -8.31428 -7.79962 -6.34367 -4.02912 1.70136 1.79006 3.43092 3.46977 3.59319 4.03065 4.47024 4.54183 4.98430 5.09175 5.35549 5.42851 5.47714 5.57997 5.76376 5.80693 6.02637 6.12043 6.26460 6.28809 6.35625 6.52853 6.61377 6.78084 6.83144 6.85161 7.19369 7.20744 7.39190 7.53208 7.90851 8.21890 8.47986 8.89722 9.68210 11.06004 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027124 B = 0.009785 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.032844 B = 2860.949031 C = 3573.079930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 1.070 2.930 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.594 4.594 8 H 0.051 0.949 9 C 0.023 3.977 10 C -0.044 4.044 11 H 0.070 0.930 12 C -0.121 4.121 13 C -0.076 4.076 14 C -0.094 4.094 15 C -0.138 4.138 16 C 0.083 3.917 17 O -0.503 6.503 18 C -0.148 4.148 19 C -0.077 4.077 20 C -0.054 4.054 21 H 0.268 0.732 22 H 0.012 0.988 23 H 0.009 0.991 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.383 0.617 30 H 0.123 0.877 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -8.611 -5.074 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.632 4.632 8 H 0.069 0.931 9 C -0.014 4.014 10 C -0.063 4.063 11 H 0.088 0.912 12 C -0.158 4.158 13 C -0.113 4.113 14 C -0.094 4.094 15 C -0.157 4.157 16 C 0.039 3.961 17 O -0.312 6.312 18 C -0.167 4.167 19 C -0.095 4.095 20 C -0.054 4.054 21 H 0.079 0.921 22 H 0.030 0.970 23 H 0.027 0.973 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.135 0.865 29 H 0.238 0.762 30 H 0.141 0.859 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.401 -7.358 -4.770 10.299 hybrid contribution -0.105 -1.222 -0.437 1.302 sum 5.295 -8.580 -5.207 11.348 Atomic orbital electron populations 1.70721 1.06910 1.30572 1.47064 1.25776 0.96557 1.02605 0.93983 0.83533 0.74527 0.75131 0.76938 1.21505 1.21384 1.21445 1.22078 0.94324 0.91740 1.55081 0.93053 1.19223 0.93782 0.92328 0.96091 1.20782 0.97175 0.95277 0.93027 0.91171 1.22423 1.00854 0.97297 0.95260 1.20989 0.96465 0.99002 0.94811 1.20487 0.97455 0.97635 0.93869 1.20670 0.97166 1.01648 0.96179 1.18163 0.95119 0.96471 0.86308 1.84796 1.62661 1.68805 1.14966 1.21232 1.01695 0.98153 0.95586 1.20630 0.95683 0.98236 0.94911 1.20662 0.94046 0.93585 0.97128 0.92108 0.97000 0.97286 0.91925 0.90757 0.91541 0.90435 0.86473 0.76227 0.85916 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.96 13.65 55.43 0.76 -27.20 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.59 -16.45 8.50 -34.44 -0.29 -16.75 16 8 H 0.05 1.39 6.37 -52.49 -0.33 1.06 16 9 C 0.02 0.57 3.68 -27.88 -0.10 0.46 16 10 C -0.04 -0.91 2.83 -90.73 -0.26 -1.17 16 11 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 12 C -0.12 -2.03 6.60 -25.33 -0.17 -2.20 16 13 C -0.08 -1.21 6.76 -26.85 -0.18 -1.39 16 14 C -0.09 -1.71 6.13 -104.22 -0.64 -2.35 16 15 C -0.14 -2.31 9.98 -39.38 -0.39 -2.70 16 16 C 0.08 1.38 6.70 -39.26 -0.26 1.12 16 17 O -0.50 -7.12 13.50 -19.41 -0.26 -7.38 16 18 C -0.15 -2.56 9.99 -39.48 -0.39 -2.95 16 19 C -0.08 -1.49 9.42 -39.55 -0.37 -1.86 16 20 C -0.05 -1.09 5.18 -104.17 -0.54 -1.63 16 21 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 22 H 0.01 0.31 7.96 -51.93 -0.41 -0.10 16 23 H 0.01 0.24 8.00 -51.93 -0.42 -0.18 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.21 7.86 -51.93 -0.41 0.80 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.38 3.61 9.06 45.56 0.41 4.02 16 30 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.13 2.48 7.02 -52.49 -0.37 2.11 16 LS Contribution 261.78 15.07 3.95 3.95 Total: -1.00 -31.57 261.78 -7.50 -39.06 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.15 Total: 2.38 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -3.70 Total: -31.11 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.76 Total: -27.20 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.26 Total: -7.38 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.57 -7.50 -39.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.488 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds