Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.26696 * 52.92989 * 10 9 7 12 12 C 1.54344 * 110.30056 * 174.99829 * 10 9 7 13 13 C 1.54334 * 102.39519 * 92.55983 * 12 10 9 14 14 C 1.51377 * 105.17285 * 26.36304 * 13 12 10 15 15 C 1.38414 * 130.33826 * 162.82382 * 14 13 12 16 16 C 1.38604 * 120.17378 * 179.97438 * 15 14 13 17 17 O 1.35895 * 120.09352 * 180.02562 * 16 15 14 18 18 C 1.38746 * 119.81185 * 0.02562 * 16 15 14 19 19 C 1.38009 * 119.88272 * 359.97438 * 18 16 15 20 20 C 1.38259 * 109.75560 * 342.80274 * 14 13 12 21 21 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 23 23 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 24 24 H 1.08996 * 110.81603 * 210.78354 * 12 10 9 25 25 H 1.08998 * 110.82189 * 334.33430 * 12 10 9 26 26 H 1.08994 * 110.30527 * 145.28904 * 13 12 10 27 27 H 1.09000 * 110.30270 * 267.34600 * 13 12 10 28 28 H 1.08002 * 119.91804 * 359.97438 * 15 14 13 29 29 H 0.96705 * 114.00265 * 90.00025 * 17 16 15 30 30 H 1.08005 * 120.06287 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.85453 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9592 -3.5485 0.8153 12 6 1.4973 -5.0062 0.1257 13 6 1.2957 -5.4129 -1.3494 14 6 2.4231 -4.7407 -2.1034 15 6 2.9298 -4.9902 -3.3671 16 6 3.9828 -4.2340 -3.8573 17 8 4.4786 -4.4800 -5.0984 18 6 4.5293 -3.2250 -3.0773 19 6 4.0220 -2.9785 -1.8177 20 6 2.9691 -3.7344 -1.3282 21 1 -0.4850 -0.8401 0.0004 22 1 0.6247 -2.5570 0.8897 23 1 0.6242 -2.5567 -0.8903 24 1 2.1075 -5.7413 0.6503 25 1 0.5379 -4.8702 0.6247 26 1 1.3623 -6.4956 -1.4557 27 1 0.3314 -5.0565 -1.7116 28 1 2.5035 -5.7763 -3.9728 29 1 4.0480 -3.9746 -5.8014 30 1 5.3502 -2.6335 -3.4551 31 1 4.4480 -2.1933 -1.2107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259878901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = -60.296911 kcal Electronic energy + Delta-G solvation = -14381.180088 eV Core-core repulsion = 12011.668036 eV Total energy + Delta-G solvation = -2369.512052 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.31284 -38.93218 -36.12235 -35.06306 -32.61043 -30.02011 -29.36562 -26.93228 -24.50978 -23.63963 -22.00841 -21.01412 -18.94865 -18.81115 -17.19240 -16.39316 -16.06531 -15.91544 -15.59708 -15.11808 -14.84767 -14.19590 -13.88160 -13.68936 -13.11533 -12.92960 -12.64383 -12.55022 -12.48351 -12.04928 -11.95525 -11.70998 -11.48212 -11.23964 -10.57618 -10.51751 -9.73479 -9.21360 -8.63852 -6.32523 0.34215 0.42198 1.50068 1.59335 1.74764 2.55961 2.68794 3.19673 3.22916 3.64379 3.69486 4.09976 4.14443 4.22346 4.40569 4.43820 4.70186 4.74992 4.77244 4.90316 4.97409 5.08070 5.16607 5.23516 5.27453 5.43450 5.49274 5.54304 5.83106 5.94363 6.06074 6.23986 6.63134 6.86396 7.47121 8.76705 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027124 B = 0.009785 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.032844 B = 2860.949031 C = 3573.079930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.041 4.041 3 Si 1.115 2.885 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.599 4.599 8 H 0.053 0.947 9 C 0.029 3.971 10 C -0.044 4.044 11 H 0.060 0.940 12 C -0.115 4.115 13 C -0.072 4.072 14 C -0.098 4.098 15 C -0.141 4.141 16 C 0.094 3.906 17 O -0.503 6.503 18 C -0.154 4.154 19 C -0.096 4.096 20 C -0.090 4.090 21 H 0.255 0.745 22 H -0.007 1.007 23 H -0.015 1.015 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.407 0.593 30 H 0.143 0.857 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -9.569 -6.316 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.238 4.238 3 Si 0.937 3.063 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.637 4.637 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.063 4.063 11 H 0.079 0.921 12 C -0.152 4.152 13 C -0.109 4.109 14 C -0.098 4.098 15 C -0.159 4.159 16 C 0.050 3.950 17 O -0.316 6.316 18 C -0.172 4.172 19 C -0.114 4.114 20 C -0.090 4.090 21 H 0.064 0.936 22 H 0.011 0.989 23 H 0.004 0.996 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.266 0.734 30 H 0.160 0.840 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.488 -8.333 -6.026 12.160 hybrid contribution -0.403 -0.973 -0.132 1.061 sum 6.085 -9.306 -6.158 12.711 Atomic orbital electron populations 1.70856 1.07959 1.29782 1.49579 1.27267 0.96635 1.06600 0.93271 0.82965 0.74491 0.71479 0.77372 1.19309 1.20524 1.20790 1.22466 0.94656 0.92944 1.53632 0.92894 1.19083 0.94115 0.93725 0.93855 1.20665 0.96315 0.95604 0.93696 0.92123 1.22405 1.00694 0.95547 0.96569 1.21023 0.95480 1.00907 0.93514 1.20770 0.97664 0.97103 0.94313 1.20971 0.97001 1.02142 0.95803 1.18226 0.94264 0.95399 0.87111 1.84736 1.62931 1.69293 1.14595 1.21436 1.02229 0.98768 0.94806 1.20693 0.96319 0.98423 0.95989 1.20727 0.95416 0.95519 0.97370 0.93573 0.98918 0.99647 0.89413 0.90788 0.88108 0.90797 0.83774 0.73406 0.83952 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.04 13.65 21.45 0.29 -58.75 16 2 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 3 Si 1.11 51.08 29.90 68.60 2.05 53.14 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.60 -33.95 8.50 25.60 0.22 -33.73 16 8 H 0.05 2.92 6.37 -2.91 -0.02 2.90 16 9 C 0.03 1.51 3.68 29.85 0.11 1.62 16 10 C -0.04 -1.85 2.83 -10.87 -0.03 -1.88 16 11 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 12 C -0.11 -3.73 6.60 31.50 0.21 -3.52 16 13 C -0.07 -2.17 6.76 30.52 0.21 -1.96 16 14 C -0.10 -3.40 6.13 -19.60 -0.12 -3.52 16 15 C -0.14 -4.31 9.98 22.40 0.22 -4.09 16 16 C 0.09 2.87 6.70 22.48 0.15 3.02 16 17 O -0.50 -12.41 13.50 -92.37 -1.25 -13.66 16 18 C -0.15 -5.08 9.99 22.34 0.22 -4.86 16 19 C -0.10 -3.73 9.42 22.29 0.21 -3.52 16 20 C -0.09 -3.62 5.18 -19.57 -0.10 -3.72 16 21 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 22 H -0.01 -0.41 7.96 -2.38 -0.02 -0.42 16 23 H -0.01 -0.83 8.00 -2.39 -0.02 -0.85 16 24 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 26 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 29 H 0.41 6.09 9.06 -74.05 -0.67 5.42 16 30 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.11 4.55 7.02 -2.91 -0.02 4.53 16 Total: -1.00 -68.47 261.78 3.41 -65.05 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.56 Total: 12.30 kcal Atomic # 6 Polarization: -59.84 SS G_CDS: 1.76 Total: -58.09 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.29 Total: -58.75 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.25 Total: -13.66 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.14 kcal Total: -68.47 3.41 -65.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259878901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.757 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds