Wall clock time and date at job start Mon Mar 30 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38164 * 119.96963 * 2 1 4 4 C 1.38707 * 119.94655 * 180.02562 * 3 2 1 5 5 O 1.35905 * 120.06124 * 180.02562 * 4 3 2 6 6 C 1.38757 * 119.88720 * 359.97438 * 4 3 2 7 7 C 1.38127 * 119.94398 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.97279 * 179.97438 * 7 6 4 9 9 C 1.50705 * 115.54966 * 113.56226 * 8 7 6 10 10 H 1.07994 * 120.00525 * 93.95615 * 9 8 7 11 11 C 1.37882 * 119.99609 * 273.95595 * 9 8 7 12 12 N 1.31519 * 119.99946 * 5.85232 * 11 9 8 13 13 Si 1.86800 * 119.99897 * 186.12247 * 11 9 8 14 14 H 1.48499 * 109.46818 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46789 * 120.00284 * 13 11 9 16 16 H 1.48495 * 109.47243 * 240.00328 * 13 11 9 17 17 C 1.52996 * 117.49858 * 259.22690 * 8 7 6 18 18 C 1.52999 * 117.49947 * 327.88867 * 8 7 6 19 19 C 1.38239 * 119.97294 * 180.24919 * 2 1 3 20 20 H 1.09000 * 109.47079 * 90.00312 * 1 2 3 21 21 H 1.09005 * 109.46770 * 210.00152 * 1 2 3 22 22 H 1.08998 * 109.47458 * 329.99854 * 1 2 3 23 23 H 1.08008 * 120.02810 * 0.02562 * 3 2 1 24 24 H 0.96700 * 113.99667 * 269.97778 * 5 4 3 25 25 H 1.07995 * 120.03073 * 180.02562 * 6 4 3 26 26 H 0.97003 * 119.99396 * 185.03027 * 12 11 9 27 27 H 1.08998 * 117.50110 * 215.00017 * 17 8 7 28 28 H 1.09003 * 117.49677 * 0.02704 * 17 8 7 29 29 H 1.09001 * 117.49517 * 359.97438 * 18 8 7 30 30 H 1.09003 * 117.49797 * 144.99639 * 18 8 7 31 31 H 1.07999 * 119.94766 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1963 -0.0005 5 8 4.2655 2.3723 0.0000 6 6 4.2752 -0.0070 -0.0005 7 6 3.5806 -1.2009 0.0005 8 6 4.3303 -2.5081 0.0000 9 6 4.1836 -3.3421 1.2466 10 1 3.4274 -4.1114 1.2958 11 6 5.0151 -3.1227 2.3245 12 7 5.8577 -2.1130 2.3102 13 14 4.9500 -4.2642 3.8017 14 1 3.9302 -5.3180 3.5683 15 1 6.2792 -4.8968 3.9973 16 1 4.5893 -3.4854 5.0135 17 6 4.4601 -3.2474 -1.3332 18 6 5.6781 -2.5492 -0.7230 19 6 2.1976 -1.1975 -0.0052 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8899 0.5138 23 1 1.6571 2.1323 0.0004 24 1 4.4626 2.7130 -0.8833 25 1 5.3552 -0.0101 -0.0005 26 1 6.4927 -2.0011 3.0349 27 1 4.4396 -4.3369 -1.3087 28 1 4.0037 -2.7880 -2.2100 29 1 6.0222 -1.6308 -1.1986 30 1 6.4587 -3.1794 -0.2969 31 1 1.6564 -2.1320 -0.0097 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:11 Heat of formation + Delta-G solvation = -5.666858 kcal Electronic energy + Delta-G solvation = -14423.946294 eV Core-core repulsion = 12056.803179 eV Total energy + Delta-G solvation = -2367.143115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19316 -36.89215 -35.58445 -32.02232 -31.35497 -29.02985 -26.34120 -25.59938 -22.36898 -21.55991 -20.62793 -18.90737 -17.33223 -16.03814 -15.56728 -14.95607 -14.62523 -14.33947 -13.75240 -13.25207 -12.98203 -12.56021 -12.13889 -11.87488 -11.25110 -11.16810 -11.03185 -11.00426 -10.69153 -10.53340 -10.24864 -10.01111 -9.49545 -9.18907 -8.46337 -8.25114 -7.76806 -7.60718 -6.05987 -4.14171 2.06577 2.19205 3.27255 3.36050 3.39004 4.36484 4.43044 4.80671 5.23605 5.28108 5.50753 5.54424 5.77131 5.92389 6.05090 6.09985 6.21486 6.31110 6.37134 6.45581 6.69673 6.74961 6.78169 7.03026 7.11026 7.20844 7.37917 7.43709 7.70090 7.73470 7.85731 8.25889 8.35764 8.86760 9.51660 11.01532 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.009992 C = 0.009643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.918418 B = 2801.662676 C = 2902.902131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.087 4.087 3 C -0.173 4.173 4 C 0.090 3.910 5 O -0.503 6.503 6 C -0.129 4.129 7 C 0.020 3.980 8 C 0.067 3.933 9 C -0.493 4.493 10 H 0.063 0.937 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.201 4.201 18 C -0.154 4.154 19 C -0.121 4.121 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.112 0.888 24 H 0.378 0.622 25 H 0.126 0.874 26 H 0.260 0.740 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 4.121 -6.028 9.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 C -0.192 4.192 4 C 0.047 3.953 5 O -0.311 6.311 6 C -0.147 4.147 7 C 0.020 3.980 8 C 0.067 3.933 9 C -0.530 4.530 10 H 0.081 0.919 11 C -0.131 4.131 12 N -0.503 5.503 13 Si 0.717 3.283 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.239 4.239 18 C -0.192 4.192 19 C -0.139 4.139 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.130 0.870 24 H 0.231 0.769 25 H 0.144 0.856 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.282 4.191 -5.262 8.553 hybrid contribution 0.241 -0.384 0.497 0.672 sum -5.041 3.807 -4.766 7.913 Atomic orbital electron populations 1.20698 0.91926 1.02175 1.01476 1.19611 0.95302 0.92893 1.00923 1.20927 0.93272 0.97464 1.07522 1.18482 0.89760 0.84878 1.02214 1.84839 1.76752 1.36969 1.32581 1.21322 1.00742 0.90939 1.01747 1.19684 0.92697 0.94644 0.91021 1.17686 0.94504 0.90304 0.90845 1.20405 1.18887 1.16889 0.96826 0.91900 1.24994 0.95681 0.94605 0.97866 1.70038 1.20138 1.27320 1.32808 0.86574 0.77985 0.80924 0.82815 1.19610 1.20886 1.20984 1.23042 1.04913 0.98646 0.97270 1.22569 0.92540 1.00244 1.03826 1.20825 0.94143 0.96712 1.02211 0.91907 0.91746 0.92269 0.86969 0.76874 0.85640 0.92986 0.90098 0.91586 0.91702 0.89842 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 36.01 0.36 -1.13 16 2 C -0.09 -1.60 5.88 -104.65 -0.62 -2.21 16 3 C -0.17 -3.19 9.64 -39.44 -0.38 -3.57 16 4 C 0.09 1.81 6.71 -39.22 -0.26 1.55 16 5 O -0.50 -8.89 13.50 -19.44 -0.26 -9.15 16 6 C -0.13 -2.90 9.16 -39.43 -0.36 -3.27 16 7 C 0.02 0.47 5.10 -104.64 -0.53 -0.07 16 8 C 0.07 1.64 1.52 -156.81 -0.24 1.40 16 9 C -0.49 -13.31 8.77 -34.44 -0.30 -13.61 16 10 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 11 C 0.07 2.00 5.39 -17.82 -0.10 1.90 16 12 N -0.87 -24.55 12.87 55.43 0.71 -23.83 16 13 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C -0.20 -4.33 9.94 -26.69 -0.27 -4.59 16 18 C -0.15 -3.58 8.86 -26.69 -0.24 -3.81 16 19 C -0.12 -2.53 9.32 -39.56 -0.37 -2.90 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 22 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 23 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 24 H 0.38 4.51 9.06 45.56 0.41 4.93 16 25 H 0.13 2.96 7.07 -52.49 -0.37 2.59 16 26 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 27 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.41 7.19 -51.93 -0.37 1.04 16 30 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 31 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -29.90 271.84 -7.03 -36.93 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.25 Total: 6.17 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -3.30 Total: -30.30 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.71 Total: -23.83 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.26 Total: -9.15 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.90 -7.03 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.266 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds