Wall clock time and date at job start Mon Mar 30 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38164 * 119.96963 * 2 1 4 4 C 1.38707 * 119.94655 * 180.02562 * 3 2 1 5 5 O 1.35905 * 120.06124 * 180.02562 * 4 3 2 6 6 C 1.38757 * 119.88720 * 359.97438 * 4 3 2 7 7 C 1.38127 * 119.94398 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.97279 * 179.97438 * 7 6 4 9 9 C 1.50705 * 115.54966 * 113.56226 * 8 7 6 10 10 H 1.07994 * 120.00525 * 93.95615 * 9 8 7 11 11 C 1.37882 * 119.99609 * 273.95595 * 9 8 7 12 12 N 1.31519 * 119.99946 * 5.85232 * 11 9 8 13 13 Si 1.86800 * 119.99897 * 186.12247 * 11 9 8 14 14 H 1.48499 * 109.46818 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46789 * 120.00284 * 13 11 9 16 16 H 1.48495 * 109.47243 * 240.00328 * 13 11 9 17 17 C 1.52996 * 117.49858 * 259.22690 * 8 7 6 18 18 C 1.52999 * 117.49947 * 327.88867 * 8 7 6 19 19 C 1.38239 * 119.97294 * 180.24919 * 2 1 3 20 20 H 1.09000 * 109.47079 * 90.00312 * 1 2 3 21 21 H 1.09005 * 109.46770 * 210.00152 * 1 2 3 22 22 H 1.08998 * 109.47458 * 329.99854 * 1 2 3 23 23 H 1.08008 * 120.02810 * 0.02562 * 3 2 1 24 24 H 0.96700 * 113.99667 * 269.97778 * 5 4 3 25 25 H 1.07995 * 120.03073 * 180.02562 * 6 4 3 26 26 H 0.97003 * 119.99396 * 185.03027 * 12 11 9 27 27 H 1.08998 * 117.50110 * 215.00017 * 17 8 7 28 28 H 1.09003 * 117.49677 * 0.02704 * 17 8 7 29 29 H 1.09001 * 117.49517 * 359.97438 * 18 8 7 30 30 H 1.09003 * 117.49797 * 144.99639 * 18 8 7 31 31 H 1.07999 * 119.94766 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1963 -0.0005 5 8 4.2655 2.3723 0.0000 6 6 4.2752 -0.0070 -0.0005 7 6 3.5806 -1.2009 0.0005 8 6 4.3303 -2.5081 0.0000 9 6 4.1836 -3.3421 1.2466 10 1 3.4274 -4.1114 1.2958 11 6 5.0151 -3.1227 2.3245 12 7 5.8577 -2.1130 2.3102 13 14 4.9500 -4.2642 3.8017 14 1 3.9302 -5.3180 3.5683 15 1 6.2792 -4.8968 3.9973 16 1 4.5893 -3.4854 5.0135 17 6 4.4601 -3.2474 -1.3332 18 6 5.6781 -2.5492 -0.7230 19 6 2.1976 -1.1975 -0.0052 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8899 0.5138 23 1 1.6571 2.1323 0.0004 24 1 4.4626 2.7130 -0.8833 25 1 5.3552 -0.0101 -0.0005 26 1 6.4927 -2.0011 3.0349 27 1 4.4396 -4.3369 -1.3087 28 1 4.0037 -2.7880 -2.2100 29 1 6.0222 -1.6308 -1.1986 30 1 6.4587 -3.1794 -0.2969 31 1 1.6564 -2.1320 -0.0097 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259898112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:11 Heat of formation + Delta-G solvation = -23.665745 kcal Electronic energy + Delta-G solvation = -14424.726784 eV Core-core repulsion = 12056.803179 eV Total energy + Delta-G solvation = -2367.923605 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74014 -38.51771 -37.14183 -34.04362 -32.83545 -30.57030 -27.80922 -27.50776 -24.02013 -23.24519 -22.26946 -20.64797 -18.90521 -17.85318 -17.15968 -16.59495 -16.46546 -15.94420 -15.40696 -14.90932 -14.29005 -14.02802 -13.69076 -13.32349 -13.12375 -12.90659 -12.70228 -12.55332 -12.34562 -12.26471 -12.04501 -11.69179 -11.20178 -11.00361 -10.46390 -10.08393 -9.29449 -9.23530 -8.11153 -6.25142 0.52175 0.64785 1.38382 1.41169 1.51549 2.40722 2.88417 3.16968 3.38484 3.52981 4.05161 4.14195 4.39601 4.52856 4.56004 4.64052 4.69235 4.76516 4.92082 4.95480 5.04676 5.19869 5.24686 5.31485 5.50859 5.60605 5.66785 5.69581 5.83308 6.06142 6.20526 6.37704 6.80535 6.96368 7.43117 8.95182 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.009992 C = 0.009643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.918418 B = 2801.662676 C = 2902.902131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.077 4.077 3 C -0.171 4.171 4 C 0.094 3.906 5 O -0.510 6.510 6 C -0.157 4.157 7 C -0.001 4.001 8 C 0.041 3.959 9 C -0.506 4.506 10 H 0.057 0.943 11 C 0.026 3.974 12 N -0.897 5.897 13 Si 0.948 3.052 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.286 1.286 17 C -0.177 4.177 18 C -0.159 4.159 19 C -0.140 4.140 20 H 0.086 0.914 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.145 0.855 24 H 0.404 0.596 25 H 0.100 0.900 26 H 0.258 0.742 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.312 4.828 -6.397 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.077 4.077 3 C -0.190 4.190 4 C 0.050 3.950 5 O -0.322 6.322 6 C -0.176 4.176 7 C -0.002 4.002 8 C 0.041 3.959 9 C -0.543 4.543 10 H 0.075 0.925 11 C -0.175 4.175 12 N -0.534 5.534 13 Si 0.774 3.226 14 H -0.188 1.188 15 H -0.205 1.205 16 H -0.212 1.212 17 C -0.214 4.214 18 C -0.196 4.196 19 C -0.158 4.158 20 H 0.105 0.895 21 H 0.087 0.913 22 H 0.097 0.903 23 H 0.163 0.837 24 H 0.262 0.738 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.242 4.897 -5.660 10.415 hybrid contribution 0.825 -0.526 0.550 1.122 sum -6.418 4.371 -5.110 9.295 Atomic orbital electron populations 1.20784 0.88477 1.03401 1.03378 1.20077 0.97720 0.91764 0.98170 1.21275 0.92546 0.98907 1.06247 1.18552 0.90627 0.84631 1.01152 1.84759 1.76658 1.35843 1.34989 1.21223 0.99665 0.92253 1.04448 1.19645 0.93767 0.94017 0.92764 1.17803 0.95416 0.91545 0.91184 1.20697 1.18529 1.17076 0.98040 0.92498 1.25692 0.95581 0.95909 1.00326 1.70163 1.20969 1.28764 1.33527 0.85655 0.78142 0.79276 0.79518 1.18784 1.20480 1.21236 1.23042 1.02836 0.98756 0.96736 1.22431 0.92182 1.00499 1.04499 1.20951 0.93367 0.98070 1.03393 0.89511 0.91347 0.90269 0.83717 0.73836 0.88149 0.93305 0.89664 0.89339 0.91094 0.92073 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 10.01 71.24 0.71 -1.78 16 2 C -0.08 -2.62 5.88 -19.88 -0.12 -2.74 16 3 C -0.17 -5.80 9.64 22.36 0.22 -5.59 16 4 C 0.09 3.66 6.71 22.51 0.15 3.81 16 5 O -0.51 -17.18 13.50 -92.49 -1.25 -18.43 16 6 C -0.16 -7.17 9.16 22.37 0.20 -6.97 16 7 C 0.00 -0.06 5.10 -19.88 -0.10 -0.16 16 8 C 0.04 2.03 1.52 -53.68 -0.08 1.95 16 9 C -0.51 -27.75 8.77 25.60 0.22 -27.52 16 10 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16 11 C 0.03 1.45 5.39 84.65 0.46 1.91 16 12 N -0.90 -52.19 12.87 21.45 0.28 -51.91 16 13 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 C -0.18 -7.55 9.94 30.62 0.30 -7.24 16 18 C -0.16 -7.55 8.86 30.62 0.27 -7.28 16 19 C -0.14 -5.71 9.32 22.28 0.21 -5.50 16 20 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.07 1.61 8.09 -2.38 -0.02 1.59 16 22 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 23 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 24 H 0.40 8.80 9.06 -74.06 -0.67 8.13 16 25 H 0.10 4.96 7.07 -2.91 -0.02 4.94 16 26 H 0.26 14.41 8.32 -92.71 -0.77 13.64 16 27 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 28 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.07 3.21 7.19 -2.39 -0.02 3.19 16 30 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -64.65 271.84 3.96 -60.69 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.45 Total: 20.86 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 2.45 Total: -57.11 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.28 Total: -51.91 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.25 Total: -18.43 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.65 3.96 -60.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.029 kcal (2) G-P(sol) polarization free energy of solvation -64.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds