Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38751 * 120.02964 * 2 1 4 4 O 1.35905 * 120.05243 * 0.04866 * 3 2 1 5 5 C 1.38709 * 119.89272 * 180.02562 * 3 2 1 6 6 C 1.38168 * 119.94384 * 359.75268 * 5 3 2 7 7 C 1.38248 * 120.05281 * 0.52265 * 6 5 3 8 8 C 1.38129 * 120.02909 * 180.02562 * 2 1 3 9 9 C 1.50698 * 119.96978 * 359.97438 * 8 2 1 10 10 C 1.50695 * 115.55272 * 318.22475 * 9 8 2 11 11 H 1.07994 * 120.00353 * 144.04755 * 10 9 8 12 12 C 1.37878 * 119.99718 * 324.04149 * 10 9 8 13 13 N 1.31512 * 119.99697 * 167.89107 * 12 10 9 14 14 Si 1.86801 * 120.00319 * 347.89788 * 12 10 9 15 15 H 1.48498 * 109.47203 * 87.31775 * 14 12 10 16 16 H 1.48503 * 109.47201 * 207.31788 * 14 12 10 17 17 H 1.48500 * 109.47026 * 327.31719 * 14 12 10 18 18 C 1.53007 * 117.49442 * 172.51576 * 9 8 2 19 19 C 1.53005 * 59.99999 * 252.51353 * 18 9 8 20 20 H 1.09005 * 109.47030 * 267.35976 * 1 2 3 21 21 H 1.09000 * 109.47322 * 27.36306 * 1 2 3 22 22 H 1.09008 * 109.47060 * 147.36658 * 1 2 3 23 23 H 0.96695 * 114.00579 * 90.00001 * 4 3 2 24 24 H 1.08001 * 120.03138 * 180.02562 * 5 3 2 25 25 H 1.07997 * 119.97409 * 180.27250 * 6 5 3 26 26 H 1.07994 * 119.94412 * 179.72528 * 7 6 5 27 27 H 0.97005 * 119.99925 * 180.02562 * 13 12 10 28 28 H 1.09004 * 117.49988 * 0.02562 * 18 9 8 29 29 H 1.09005 * 117.49728 * 145.02140 * 18 9 8 30 30 H 1.08999 * 117.49229 * 252.51697 * 19 18 9 31 31 H 1.08993 * 117.49863 * 107.49522 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.2013 0.0000 4 8 1.5235 2.3792 0.0010 5 6 3.5884 1.1979 -0.0005 6 6 4.2752 -0.0009 0.0041 7 6 3.5811 -1.1965 -0.0017 8 6 2.1982 -1.1959 -0.0005 9 6 1.4447 -2.5010 -0.0005 10 6 0.2419 -2.5571 0.9057 11 1 -0.6367 -3.1075 0.6034 12 6 0.2634 -1.9059 2.1208 13 7 -0.8501 -1.7503 2.8031 14 14 1.8739 -1.2445 2.7978 15 1 2.1046 0.1263 2.2756 16 1 1.8082 -1.2047 4.2809 17 1 2.9890 -2.1294 2.3753 18 6 2.2568 -3.7855 -0.1779 19 6 1.3733 -3.2754 -1.3182 20 1 -0.3633 -0.0473 1.0266 21 1 -0.3634 0.9127 -0.4723 22 1 -0.3633 -0.8655 -0.5542 23 1 1.3279 2.7198 0.8846 24 1 4.1311 2.1317 -0.0001 25 1 5.3552 -0.0041 0.0081 26 1 4.1197 -2.1326 -0.0025 27 1 -0.8351 -1.2918 3.6578 28 1 3.3361 -3.6866 -0.2942 29 1 1.9212 -4.6716 0.3611 30 1 0.4565 -3.8259 -1.5292 31 1 1.8712 -2.8410 -2.1850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936036.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = 14.389701 kcal Electronic energy + Delta-G solvation = -15200.275808 eV Core-core repulsion = 12834.002410 eV Total energy + Delta-G solvation = -2366.273397 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75289 -37.21265 -35.24214 -32.80203 -31.41309 -29.08814 -26.07825 -25.88701 -22.34397 -21.54588 -20.66305 -19.27972 -17.59945 -16.56146 -15.45030 -15.27247 -14.76114 -14.40283 -13.90335 -12.88484 -12.85381 -12.67977 -12.34987 -11.71765 -11.64789 -11.28096 -10.80812 -10.67084 -10.45023 -10.38922 -10.26785 -9.86760 -9.55547 -9.32778 -9.14508 -8.40899 -7.79526 -7.64203 -6.20602 -4.11872 1.80963 1.94429 3.30167 3.40654 3.48929 4.12588 4.41204 4.77430 4.83627 5.31184 5.46562 5.48024 5.68534 5.76818 6.01557 6.04819 6.27205 6.30509 6.47955 6.55671 6.56940 6.70951 6.83764 6.93866 6.96632 7.06751 7.11293 7.36196 7.37141 7.64334 7.70230 8.14472 8.42058 8.82298 9.43983 10.88610 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.017494 C = 0.014384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.290721 B = 1600.156572 C = 1946.184798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.067 4.067 3 C 0.087 3.913 4 O -0.498 6.498 5 C -0.156 4.156 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.030 4.030 9 C 0.041 3.959 10 C -0.481 4.481 11 H 0.081 0.919 12 C 0.089 3.911 13 N -0.887 5.887 14 Si 0.858 3.142 15 H -0.262 1.262 16 H -0.301 1.301 17 H -0.259 1.259 18 C -0.207 4.207 19 C -0.178 4.178 20 H 0.090 0.910 21 H 0.039 0.961 22 H 0.086 0.914 23 H 0.381 0.619 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.266 0.734 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 4.050 -3.779 8.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.067 4.067 3 C 0.042 3.958 4 O -0.308 6.308 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.149 4.149 8 C -0.031 4.031 9 C 0.040 3.960 10 C -0.517 4.517 11 H 0.099 0.901 12 C -0.115 4.115 13 N -0.523 5.523 14 Si 0.686 3.314 15 H -0.188 1.188 16 H -0.229 1.229 17 H -0.183 1.183 18 C -0.244 4.244 19 C -0.216 4.216 20 H 0.109 0.891 21 H 0.058 0.942 22 H 0.105 0.895 23 H 0.236 0.764 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.956 4.069 -4.221 9.097 hybrid contribution 0.982 0.400 1.081 1.514 sum 7.938 4.469 -3.140 9.636 Atomic orbital electron populations 1.20955 0.89435 1.01145 1.04558 1.20126 0.98032 0.91078 0.97468 1.18275 0.89628 0.84922 1.02930 1.84739 1.76840 1.36189 1.32992 1.21175 0.93507 0.98190 1.04537 1.20803 0.99101 0.92136 1.02563 1.21163 0.94302 0.97905 1.01500 1.19338 0.92360 0.94759 0.96616 1.18159 0.96167 0.85189 0.96474 1.20224 0.97878 1.33034 1.00608 0.90109 1.24853 0.95642 0.94503 0.96458 1.69935 1.26133 1.41542 1.14716 0.87271 0.85643 0.81347 0.77142 1.18752 1.22913 1.18306 1.23204 0.95828 1.01543 1.03873 1.22811 1.01414 1.05514 0.91838 0.89134 0.94159 0.89517 0.76387 0.86483 0.86526 0.86109 0.92458 0.91027 0.89450 0.89603 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 7.94 36.00 0.29 -2.05 16 2 C -0.07 -1.46 3.53 -104.48 -0.37 -1.83 16 3 C 0.09 1.73 5.78 -39.22 -0.23 1.50 16 4 O -0.50 -8.83 12.51 -19.44 -0.24 -9.07 16 5 C -0.16 -2.80 9.99 -39.43 -0.39 -3.19 16 6 C -0.13 -2.26 10.04 -39.60 -0.40 -2.66 16 7 C -0.13 -2.60 7.76 -39.56 -0.31 -2.91 16 8 C -0.03 -0.67 2.72 -104.64 -0.28 -0.96 16 9 C 0.04 0.94 1.11 -156.81 -0.17 0.77 16 10 C -0.48 -12.73 7.08 -34.44 -0.24 -12.98 16 11 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 12 C 0.09 2.40 3.16 -17.82 -0.06 2.35 16 13 N -0.89 -25.34 13.71 55.43 0.76 -24.58 16 14 Si 0.86 21.23 23.27 -169.99 -3.96 17.27 16 15 H -0.26 -6.22 5.15 56.52 0.29 -5.93 16 16 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 17 H -0.26 -6.36 6.49 56.52 0.37 -6.00 16 18 C -0.21 -4.27 9.56 -26.72 -0.26 -4.53 16 19 C -0.18 -3.62 9.94 -26.73 -0.27 -3.88 16 20 H 0.09 2.22 5.62 -51.93 -0.29 1.93 16 21 H 0.04 0.81 7.45 -51.93 -0.39 0.43 16 22 H 0.09 2.03 6.27 -51.92 -0.33 1.70 16 23 H 0.38 5.24 9.06 45.56 0.41 5.65 16 24 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 26 H 0.12 2.22 5.99 -52.49 -0.31 1.91 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.07 1.34 6.15 -51.93 -0.32 1.02 16 29 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 244.29 15.07 3.68 3.68 Total: -1.00 -29.11 244.29 -5.49 -34.60 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.04 Total: 8.47 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -2.69 Total: -30.37 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.76 Total: -24.58 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.24 Total: -9.07 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -3.96 Total: 17.27 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.11 -5.49 -34.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936036.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.986 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds