Wall clock time and date at job start Mon Mar 30 2020 03:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38751 * 120.02964 * 2 1 4 4 O 1.35905 * 120.05243 * 0.04866 * 3 2 1 5 5 C 1.38709 * 119.89272 * 180.02562 * 3 2 1 6 6 C 1.38168 * 119.94384 * 359.75268 * 5 3 2 7 7 C 1.38248 * 120.05281 * 0.52265 * 6 5 3 8 8 C 1.38129 * 120.02909 * 180.02562 * 2 1 3 9 9 C 1.50698 * 119.96978 * 359.97438 * 8 2 1 10 10 C 1.50695 * 115.55272 * 318.22475 * 9 8 2 11 11 H 1.07994 * 120.00353 * 144.04755 * 10 9 8 12 12 C 1.37878 * 119.99718 * 324.04149 * 10 9 8 13 13 N 1.31512 * 119.99697 * 167.89107 * 12 10 9 14 14 Si 1.86801 * 120.00319 * 347.89788 * 12 10 9 15 15 H 1.48498 * 109.47203 * 87.31775 * 14 12 10 16 16 H 1.48503 * 109.47201 * 207.31788 * 14 12 10 17 17 H 1.48500 * 109.47026 * 327.31719 * 14 12 10 18 18 C 1.53007 * 117.49442 * 172.51576 * 9 8 2 19 19 C 1.53005 * 59.99999 * 252.51353 * 18 9 8 20 20 H 1.09005 * 109.47030 * 267.35976 * 1 2 3 21 21 H 1.09000 * 109.47322 * 27.36306 * 1 2 3 22 22 H 1.09008 * 109.47060 * 147.36658 * 1 2 3 23 23 H 0.96695 * 114.00579 * 90.00001 * 4 3 2 24 24 H 1.08001 * 120.03138 * 180.02562 * 5 3 2 25 25 H 1.07997 * 119.97409 * 180.27250 * 6 5 3 26 26 H 1.07994 * 119.94412 * 179.72528 * 7 6 5 27 27 H 0.97005 * 119.99925 * 180.02562 * 13 12 10 28 28 H 1.09004 * 117.49988 * 0.02562 * 18 9 8 29 29 H 1.09005 * 117.49728 * 145.02140 * 18 9 8 30 30 H 1.08999 * 117.49229 * 252.51697 * 19 18 9 31 31 H 1.08993 * 117.49863 * 107.49522 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.2013 0.0000 4 8 1.5235 2.3792 0.0010 5 6 3.5884 1.1979 -0.0005 6 6 4.2752 -0.0009 0.0041 7 6 3.5811 -1.1965 -0.0017 8 6 2.1982 -1.1959 -0.0005 9 6 1.4447 -2.5010 -0.0005 10 6 0.2419 -2.5571 0.9057 11 1 -0.6367 -3.1075 0.6034 12 6 0.2634 -1.9059 2.1208 13 7 -0.8501 -1.7503 2.8031 14 14 1.8739 -1.2445 2.7978 15 1 2.1046 0.1263 2.2756 16 1 1.8082 -1.2047 4.2809 17 1 2.9890 -2.1294 2.3753 18 6 2.2568 -3.7855 -0.1779 19 6 1.3733 -3.2754 -1.3182 20 1 -0.3633 -0.0473 1.0266 21 1 -0.3634 0.9127 -0.4723 22 1 -0.3633 -0.8655 -0.5542 23 1 1.3279 2.7198 0.8846 24 1 4.1311 2.1317 -0.0001 25 1 5.3552 -0.0041 0.0081 26 1 4.1197 -2.1326 -0.0025 27 1 -0.8351 -1.2918 3.6578 28 1 3.3361 -3.6866 -0.2942 29 1 1.9212 -4.6716 0.3611 30 1 0.4565 -3.8259 -1.5292 31 1 1.8712 -2.8410 -2.1850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936036.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:15 Heat of formation + Delta-G solvation = -5.336231 kcal Electronic energy + Delta-G solvation = -15201.131188 eV Core-core repulsion = 12834.002410 eV Total energy + Delta-G solvation = -2367.128778 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.27101 -38.75221 -36.74430 -34.70898 -33.11976 -30.55960 -27.98141 -27.56028 -23.93179 -23.15934 -22.19443 -20.97300 -19.27441 -18.23576 -16.97496 -16.90083 -16.46406 -15.91469 -15.53809 -14.79553 -14.50009 -14.29960 -14.01287 -13.47576 -13.12126 -12.99122 -12.59636 -12.32397 -12.26604 -11.97230 -11.92108 -11.72093 -11.24215 -11.10665 -10.84964 -10.35446 -9.30777 -9.23729 -8.29291 -6.21842 0.34078 0.45933 1.36724 1.41342 1.51060 2.38531 2.66684 2.95732 3.38158 3.57653 3.94153 4.08875 4.21878 4.28578 4.36060 4.53407 4.67360 4.77340 4.88516 4.97252 5.01518 5.10987 5.12919 5.28512 5.48273 5.49787 5.54701 5.59643 5.76587 5.89551 6.06738 6.34237 6.71994 6.84237 7.35820 8.83673 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.024210 B = 0.017494 C = 0.014384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.290721 B = 1600.156572 C = 1946.184798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.100 4.100 3 C 0.083 3.917 4 O -0.503 6.503 5 C -0.153 4.153 6 C -0.114 4.114 7 C -0.142 4.142 8 C -0.048 4.048 9 C 0.011 3.989 10 C -0.478 4.478 11 H 0.038 0.962 12 C 0.051 3.949 13 N -0.932 5.932 14 Si 0.909 3.091 15 H -0.245 1.245 16 H -0.316 1.316 17 H -0.250 1.250 18 C -0.193 4.193 19 C -0.167 4.167 20 H 0.062 0.938 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.399 0.601 24 H 0.151 0.849 25 H 0.160 0.840 26 H 0.136 0.864 27 H 0.264 0.736 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.414 5.181 -4.573 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C 0.038 3.962 4 O -0.315 6.315 5 C -0.171 4.171 6 C -0.132 4.132 7 C -0.160 4.160 8 C -0.049 4.049 9 C 0.010 3.990 10 C -0.515 4.515 11 H 0.057 0.943 12 C -0.148 4.148 13 N -0.571 5.571 14 Si 0.736 3.264 15 H -0.169 1.169 16 H -0.245 1.245 17 H -0.174 1.174 18 C -0.230 4.230 19 C -0.204 4.204 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.257 0.743 24 H 0.169 0.831 25 H 0.177 0.823 26 H 0.154 0.846 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.347 5.200 -5.035 12.628 hybrid contribution -0.121 0.052 1.241 1.248 sum 10.226 5.252 -3.794 12.106 Atomic orbital electron populations 1.20678 0.90998 1.00581 1.02457 1.20162 0.97236 0.92441 1.00179 1.18458 0.90694 0.84628 1.02393 1.84686 1.76842 1.35308 1.34618 1.21580 0.92621 0.99976 1.02932 1.21288 1.01219 0.90934 0.99774 1.21399 0.93248 0.99713 1.01641 1.19284 0.93540 0.93746 0.98292 1.18104 0.96067 0.87266 0.97515 1.20289 0.98102 1.31830 1.01285 0.94338 1.25382 0.97928 0.94903 0.96619 1.70051 1.28138 1.43601 1.15296 0.86437 0.82706 0.81913 0.75316 1.16941 1.24507 1.17370 1.23212 0.97240 0.99479 1.03072 1.22841 1.01376 1.04350 0.91828 0.91921 0.92942 0.91929 0.74333 0.83123 0.82260 0.84617 0.92678 0.88203 0.90216 0.90197 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.13 7.94 71.23 0.57 -3.56 16 2 C -0.10 -4.23 3.53 -19.77 -0.07 -4.30 16 3 C 0.08 3.03 5.78 22.51 0.13 3.16 16 4 O -0.50 -16.43 12.51 -92.48 -1.16 -17.58 16 5 C -0.15 -4.71 9.99 22.37 0.22 -4.49 16 6 C -0.11 -3.39 10.04 22.26 0.22 -3.17 16 7 C -0.14 -5.04 7.76 22.28 0.17 -4.86 16 8 C -0.05 -2.03 2.72 -19.88 -0.05 -2.09 16 9 C 0.01 0.51 1.11 -53.67 -0.06 0.45 16 10 C -0.48 -26.20 7.08 25.60 0.18 -26.02 16 11 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 12 C 0.05 2.82 3.16 84.66 0.27 3.09 16 13 N -0.93 -55.61 13.71 21.45 0.29 -55.31 16 14 Si 0.91 43.76 23.27 68.60 1.60 45.35 16 15 H -0.25 -10.99 5.15 99.48 0.51 -10.48 16 16 H -0.32 -15.73 7.11 99.48 0.71 -15.03 16 17 H -0.25 -11.53 6.49 99.48 0.65 -10.88 16 18 C -0.19 -7.57 9.56 30.60 0.29 -7.28 16 19 C -0.17 -6.57 9.94 30.60 0.30 -6.26 16 20 H 0.06 3.18 5.62 -2.38 -0.01 3.17 16 21 H 0.05 2.15 7.45 -2.39 -0.02 2.13 16 22 H 0.06 3.06 6.27 -2.38 -0.01 3.05 16 23 H 0.40 9.90 9.06 -74.06 -0.67 9.23 16 24 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 25 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 26 H 0.14 4.31 5.99 -2.91 -0.02 4.29 16 27 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 28 H 0.10 3.35 6.15 -2.38 -0.01 3.34 16 29 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 30 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -64.00 244.29 3.13 -60.87 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.22 Total: 22.00 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 2.18 Total: -55.33 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.29 Total: -55.31 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.16 Total: -17.58 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.60 Total: 45.35 kcal Total: -64.00 3.13 -60.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936036.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.532 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds