Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38421 * 119.82390 * 2 1 4 4 C 1.37869 * 120.17202 * 180.29878 * 3 2 1 5 5 C 1.39865 * 119.82139 * 359.47821 * 4 3 2 6 6 C 1.47171 * 120.17396 * 180.22963 * 5 4 3 7 7 O 1.21247 * 120.00212 * 174.84769 * 6 5 4 8 8 C 1.39837 * 119.65901 * 0.24560 * 5 4 3 9 9 C 1.50705 * 120.08911 * 180.02562 * 8 5 4 10 10 C 1.52996 * 109.47277 * 281.92350 * 9 8 5 11 11 C 1.50701 * 109.47371 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99462 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99838 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00360 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99492 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47524 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47331 * 120.00503 * 15 13 11 18 18 H 1.48502 * 109.47470 * 239.99936 * 15 13 11 19 19 C 1.37901 * 119.82335 * 0.02562 * 8 5 4 20 20 H 1.09002 * 109.46939 * 270.24533 * 1 2 3 21 21 H 1.08992 * 109.47282 * 30.25242 * 1 2 3 22 22 H 1.09001 * 109.46775 * 150.25062 * 1 2 3 23 23 H 1.08001 * 119.91736 * 0.03117 * 3 2 1 24 24 H 1.08002 * 120.08866 * 179.74639 * 4 3 2 25 25 H 1.07998 * 119.99217 * 354.85486 * 6 5 4 26 26 H 1.09004 * 109.46786 * 41.92329 * 9 8 5 27 27 H 1.08994 * 109.47161 * 161.92188 * 9 8 5 28 28 H 1.09000 * 109.47331 * 300.00204 * 10 9 8 29 29 H 1.09004 * 109.47028 * 59.99847 * 10 9 8 30 30 H 0.97005 * 120.00024 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.91490 * 179.97438 * 19 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2009 0.0000 4 6 3.5741 1.2093 -0.0062 5 6 4.2771 0.0001 -0.0015 6 6 5.7488 0.0000 -0.0030 7 8 6.3551 -1.0453 0.0954 8 6 3.5743 -1.2088 0.0043 9 6 4.3219 -2.5174 0.0100 10 6 4.8332 -2.8188 -1.4001 11 6 5.5813 -4.1270 -1.3943 12 1 5.6817 -4.6875 -0.4766 13 6 6.1367 -4.6087 -2.5607 14 7 6.0140 -3.9264 -3.6782 15 14 7.0634 -6.2306 -2.5535 16 1 7.0593 -6.7971 -1.1808 17 1 6.4040 -7.1817 -3.4840 18 1 8.4643 -6.0023 -2.9900 19 6 2.1953 -1.2005 0.0048 20 1 -0.3633 0.0044 1.0277 21 1 -0.3633 0.8876 -0.5177 22 1 -0.3633 -0.8922 -0.5099 23 1 1.6513 2.1338 0.0005 24 1 4.1099 2.1470 -0.0103 25 1 6.2886 0.9312 -0.0916 26 1 5.1663 -2.4503 0.6961 27 1 3.6541 -3.3160 0.3328 28 1 3.9888 -2.8858 -2.0862 29 1 5.5011 -2.0201 -1.7229 30 1 6.4051 -4.2652 -4.4988 31 1 1.6511 -2.1333 0.0089 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259992734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = -25.011715 kcal Electronic energy + Delta-G solvation = -14086.559314 eV Core-core repulsion = 11718.577343 eV Total energy + Delta-G solvation = -2367.981971 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72778 -37.72936 -34.07364 -32.61216 -31.86246 -29.02685 -27.55739 -25.14919 -22.80276 -22.10555 -20.97051 -19.36005 -16.63274 -16.21018 -15.60913 -14.66501 -14.41660 -14.20616 -13.87548 -13.63190 -13.39680 -12.84959 -12.55852 -12.24902 -12.00791 -11.68202 -11.42230 -11.11500 -10.88049 -10.67082 -10.41914 -9.82669 -9.54482 -9.04194 -8.74556 -8.49358 -8.22357 -8.15223 -5.88880 -3.89116 1.05938 1.72191 2.91707 3.37987 3.44686 3.49893 4.12550 4.55647 4.67167 4.96011 5.00741 5.20333 5.35372 5.47301 5.59289 5.62365 5.74814 5.84317 5.95952 6.16141 6.29041 6.45245 6.55018 6.75286 6.83899 7.02873 7.15111 7.33342 7.75800 7.97756 8.01954 8.18200 8.55185 9.16679 9.72908 11.22908 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.038106 B = 0.007366 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.615048 B = 3800.291629 C = 4205.737586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.156 4.156 4 C -0.068 4.068 5 C -0.198 4.198 6 C 0.362 3.638 7 O -0.419 6.419 8 C 0.006 3.994 9 C -0.092 4.092 10 C 0.041 3.959 11 C -0.507 4.507 12 H 0.054 0.946 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.140 4.140 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.125 0.875 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.008 0.992 29 H 0.022 0.978 30 H 0.258 0.742 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 11.251 7.573 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.087 4.087 5 C -0.199 4.199 6 C 0.218 3.782 7 O -0.289 6.289 8 C 0.005 3.995 9 C -0.129 4.129 10 C 0.004 3.996 11 C -0.545 4.545 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.158 4.158 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.138 0.862 24 H 0.143 0.857 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.854 10.662 7.447 15.193 hybrid contribution 0.362 -0.678 -0.256 0.810 sum -7.492 9.984 7.191 14.406 Atomic orbital electron populations 1.20835 0.91442 1.02831 1.02159 1.20105 0.95894 0.93293 0.96558 1.20805 0.94086 0.97229 1.05320 1.21246 0.94183 0.96863 0.96363 1.20823 0.96836 0.93582 1.08660 1.23852 0.88369 0.93030 0.72930 1.90644 1.70851 1.35472 1.31959 1.20751 0.93455 0.96072 0.89179 1.21152 0.98765 0.89840 1.03140 1.18951 0.95526 0.96795 0.88368 1.21244 1.33386 1.05399 0.94518 0.92725 1.24999 0.96536 0.97371 0.95680 1.69984 1.45954 1.38522 0.99404 0.86552 0.79664 0.83934 0.77941 1.19765 1.21156 1.21087 1.21010 0.93802 0.97548 1.03470 0.91181 0.91609 0.91347 0.86247 0.85702 0.89232 0.89407 0.93016 0.97343 0.95978 0.93260 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.00 36.01 0.36 -0.84 16 2 C -0.06 -0.81 5.89 -104.50 -0.62 -1.42 16 3 C -0.16 -2.00 9.68 -39.65 -0.38 -2.39 16 4 C -0.07 -0.92 9.80 -39.11 -0.38 -1.30 16 5 C -0.20 -3.38 5.86 -105.06 -0.62 -3.99 16 6 C 0.36 6.20 11.03 34.36 0.38 6.58 16 7 O -0.42 -9.24 12.62 5.59 0.07 -9.17 16 8 C 0.01 0.11 5.18 -104.15 -0.54 -0.43 16 9 C -0.09 -2.09 4.56 -27.88 -0.13 -2.22 16 10 C 0.04 1.12 4.47 -27.88 -0.12 1.00 16 11 C -0.51 -15.23 9.11 -34.44 -0.31 -15.55 16 12 H 0.05 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -28.26 13.29 55.43 0.74 -27.52 16 15 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 16 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 19 C -0.14 -2.34 9.30 -39.65 -0.37 -2.71 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 22 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 23 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 24 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 25 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.09 2.07 5.93 -51.93 -0.31 1.76 16 27 H 0.05 1.12 7.98 -51.93 -0.41 0.71 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.02 0.65 6.44 -51.93 -0.33 0.32 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.12 1.94 8.02 -52.49 -0.42 1.52 16 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -34.13 268.17 -6.98 -41.11 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -3.97 Total: -4.41 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.83 Total: -21.73 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.74 Total: -27.52 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.13 -6.98 -41.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.098 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds