Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38421 * 119.82390 * 2 1 4 4 C 1.37869 * 120.17202 * 180.29878 * 3 2 1 5 5 C 1.39865 * 119.82139 * 359.47821 * 4 3 2 6 6 C 1.47171 * 120.17396 * 180.22963 * 5 4 3 7 7 O 1.21247 * 120.00212 * 174.84769 * 6 5 4 8 8 C 1.39837 * 119.65901 * 0.24560 * 5 4 3 9 9 C 1.50705 * 120.08911 * 180.02562 * 8 5 4 10 10 C 1.52996 * 109.47277 * 281.92350 * 9 8 5 11 11 C 1.50701 * 109.47371 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99462 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99838 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00360 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99492 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47524 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47331 * 120.00503 * 15 13 11 18 18 H 1.48502 * 109.47470 * 239.99936 * 15 13 11 19 19 C 1.37901 * 119.82335 * 0.02562 * 8 5 4 20 20 H 1.09002 * 109.46939 * 270.24533 * 1 2 3 21 21 H 1.08992 * 109.47282 * 30.25242 * 1 2 3 22 22 H 1.09001 * 109.46775 * 150.25062 * 1 2 3 23 23 H 1.08001 * 119.91736 * 0.03117 * 3 2 1 24 24 H 1.08002 * 120.08866 * 179.74639 * 4 3 2 25 25 H 1.07998 * 119.99217 * 354.85486 * 6 5 4 26 26 H 1.09004 * 109.46786 * 41.92329 * 9 8 5 27 27 H 1.08994 * 109.47161 * 161.92188 * 9 8 5 28 28 H 1.09000 * 109.47331 * 300.00204 * 10 9 8 29 29 H 1.09004 * 109.47028 * 59.99847 * 10 9 8 30 30 H 0.97005 * 120.00024 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.91490 * 179.97438 * 19 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2009 0.0000 4 6 3.5741 1.2093 -0.0062 5 6 4.2771 0.0001 -0.0015 6 6 5.7488 0.0000 -0.0030 7 8 6.3551 -1.0453 0.0954 8 6 3.5743 -1.2088 0.0043 9 6 4.3219 -2.5174 0.0100 10 6 4.8332 -2.8188 -1.4001 11 6 5.5813 -4.1270 -1.3943 12 1 5.6817 -4.6875 -0.4766 13 6 6.1367 -4.6087 -2.5607 14 7 6.0140 -3.9264 -3.6782 15 14 7.0634 -6.2306 -2.5535 16 1 7.0593 -6.7971 -1.1808 17 1 6.4040 -7.1817 -3.4840 18 1 8.4643 -6.0023 -2.9900 19 6 2.1953 -1.2005 0.0048 20 1 -0.3633 0.0044 1.0277 21 1 -0.3633 0.8876 -0.5177 22 1 -0.3633 -0.8922 -0.5099 23 1 1.6513 2.1338 0.0005 24 1 4.1099 2.1470 -0.0103 25 1 6.2886 0.9312 -0.0916 26 1 5.1663 -2.4503 0.6961 27 1 3.6541 -3.3160 0.3328 28 1 3.9888 -2.8858 -2.0862 29 1 5.5011 -2.0201 -1.7229 30 1 6.4051 -4.2652 -4.4988 31 1 1.6511 -2.1333 0.0089 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259992734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = -46.076476 kcal Electronic energy + Delta-G solvation = -14087.472750 eV Core-core repulsion = 11718.577343 eV Total energy + Delta-G solvation = -2368.895408 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03196 -39.06150 -35.98019 -34.22182 -33.33808 -30.77461 -28.61152 -27.11179 -24.19911 -23.54764 -22.57978 -20.77850 -18.56248 -17.85774 -16.87054 -16.54632 -15.87355 -15.56527 -15.25778 -14.95977 -14.56277 -14.44391 -14.15099 -14.06925 -13.30551 -13.01165 -12.86173 -12.82494 -12.52225 -12.39395 -11.97028 -11.81286 -11.53369 -11.18382 -10.57299 -10.24104 -9.68432 -9.45935 -8.21043 -6.31206 -0.16351 0.52657 1.34830 1.36923 1.50334 1.66313 2.39160 2.91732 3.11219 3.48549 3.86625 3.99920 4.04340 4.36612 4.41300 4.56945 4.72293 4.81959 4.84048 4.89608 4.95356 5.06810 5.25270 5.29044 5.40816 5.45280 5.55594 5.65788 5.81668 5.89730 6.09717 6.25386 6.74166 6.84945 7.36082 8.91386 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.038106 B = 0.007366 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.615048 B = 3800.291629 C = 4205.737586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.149 4.149 4 C -0.053 4.053 5 C -0.224 4.224 6 C 0.363 3.637 7 O -0.482 6.482 8 C -0.033 4.033 9 C -0.076 4.076 10 C 0.054 3.946 11 C -0.536 4.536 12 H 0.052 0.948 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.276 1.276 19 C -0.161 4.161 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.064 0.936 23 H 0.163 0.837 24 H 0.171 0.829 25 H 0.148 0.852 26 H 0.073 0.927 27 H 0.047 0.953 28 H -0.023 1.023 29 H -0.005 1.005 30 H 0.263 0.737 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 13.148 8.041 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.166 4.166 4 C -0.071 4.071 5 C -0.225 4.225 6 C 0.224 3.776 7 O -0.357 6.357 8 C -0.034 4.034 9 C -0.114 4.114 10 C 0.017 3.983 11 C -0.574 4.574 12 H 0.071 0.929 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.791 3.209 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.202 1.202 19 C -0.179 4.179 20 H 0.106 0.894 21 H 0.108 0.892 22 H 0.083 0.917 23 H 0.181 0.819 24 H 0.188 0.812 25 H 0.164 0.836 26 H 0.091 0.909 27 H 0.066 0.934 28 H -0.005 1.005 29 H 0.014 0.986 30 H 0.072 0.928 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.870 12.582 7.925 17.314 hybrid contribution 0.565 -1.125 -0.400 1.321 sum -8.306 11.457 7.525 16.027 Atomic orbital electron populations 1.20920 0.88686 1.03890 1.03623 1.20549 0.97931 0.92534 0.94450 1.21377 0.94086 0.98379 1.02782 1.21729 0.94769 0.96930 0.93685 1.21072 0.97141 0.94312 1.09960 1.24759 0.88836 0.93870 0.70166 1.90627 1.71877 1.37963 1.35229 1.20571 0.94604 0.95183 0.93018 1.20757 0.98525 0.92508 0.99562 1.18696 0.93529 0.95232 0.90807 1.21653 1.34299 1.06608 0.94828 0.92942 1.25992 0.97310 1.01614 0.95056 1.70114 1.46749 1.40547 1.00149 0.85371 0.78193 0.78797 0.78506 1.18865 1.19767 1.20207 1.21098 0.92983 0.99090 1.04698 0.89352 0.89215 0.91671 0.81912 0.81186 0.83628 0.90871 0.93426 1.00457 0.98620 0.92802 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 10.00 71.24 0.71 -1.27 16 2 C -0.05 -1.37 5.89 -19.78 -0.12 -1.49 16 3 C -0.15 -3.15 9.68 22.23 0.22 -2.94 16 4 C -0.05 -1.24 9.80 22.58 0.22 -1.02 16 5 C -0.22 -7.52 5.86 -20.15 -0.12 -7.63 16 6 C 0.36 12.43 11.03 70.17 0.77 13.21 16 7 O -0.48 -22.40 12.62 -2.93 -0.04 -22.44 16 8 C -0.03 -1.33 5.18 -19.56 -0.10 -1.44 16 9 C -0.08 -3.72 4.56 29.85 0.14 -3.59 16 10 C 0.05 3.21 4.47 29.85 0.13 3.35 16 11 C -0.54 -33.75 9.11 25.60 0.23 -33.51 16 12 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.93 -60.58 13.29 21.45 0.28 -60.30 16 15 Si 0.97 47.54 29.54 68.60 2.03 49.57 16 16 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 C -0.16 -5.42 9.30 22.22 0.21 -5.21 16 20 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 21 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 22 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 23 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 24 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 25 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 26 H 0.07 3.72 5.93 -2.38 -0.01 3.71 16 27 H 0.05 2.23 7.98 -2.39 -0.02 2.21 16 28 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 29 H 0.00 -0.29 6.44 -2.39 -0.02 -0.30 16 30 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 31 H 0.12 3.93 8.02 -2.91 -0.02 3.90 16 Total: -1.00 -79.39 268.17 6.14 -73.25 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 1.11 Total: 1.17 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 2.76 Total: -41.25 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.28 Total: -60.30 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.04 Total: -22.44 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -79.39 6.14 -73.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.173 kcal (2) G-P(sol) polarization free energy of solvation -79.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds