Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99710 * 2 1 4 4 H 1.48499 * 109.46855 * 240.00245 * 3 2 1 5 5 H 1.48497 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47079 * 120.00290 * 3 2 1 7 7 C 1.37876 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99891 * 185.22669 * 7 2 1 9 9 C 1.50695 * 119.99661 * 5.22519 * 7 2 1 10 10 H 1.08999 * 109.21888 * 25.39287 * 9 7 2 11 11 C 1.52727 * 109.25632 * 265.94346 * 9 7 2 12 12 C 1.53320 * 108.39916 * 188.61425 * 11 9 7 13 13 C 1.52731 * 108.38939 * 69.78259 * 12 11 9 14 14 C 1.50637 * 110.59461 * 308.83817 * 13 12 11 15 15 C 1.38958 * 117.73820 * 197.71247 * 14 13 12 16 16 C 1.37955 * 120.66598 * 180.58197 * 15 14 13 17 17 C 1.38178 * 119.83039 * 0.02562 * 16 15 14 18 18 C 1.38428 * 119.71105 * 359.87390 * 17 16 15 19 19 O 1.35898 * 119.78980 * 179.97438 * 18 17 16 20 20 C 1.37571 * 122.54666 * 18.04604 * 14 13 12 21 21 H 0.97005 * 120.00063 * 354.97587 * 1 2 3 22 22 H 1.09007 * 109.68156 * 308.34213 * 11 9 7 23 23 H 1.09006 * 109.68035 * 68.84986 * 11 9 7 24 24 H 1.09000 * 109.68396 * 189.51139 * 12 11 9 25 25 H 1.09004 * 109.67610 * 310.02807 * 12 11 9 26 26 H 1.09007 * 109.24949 * 188.54959 * 13 12 11 27 27 H 1.09000 * 109.25157 * 69.12835 * 13 12 11 28 28 H 1.07997 * 119.66685 * 0.60971 * 15 14 13 29 29 H 1.07995 * 120.08718 * 180.02562 * 16 15 14 30 30 H 1.08006 * 120.14234 * 179.89306 * 17 16 15 31 31 H 0.96707 * 114.00026 * 84.61834 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0847 9 6 1.2558 -2.4963 -0.1200 10 1 0.3088 -2.3202 -0.6301 11 6 0.9803 -3.0488 1.2769 12 6 0.4156 -4.4670 1.1337 13 6 1.5331 -5.3828 0.6386 14 6 2.1969 -4.7975 -0.5805 15 6 2.9593 -5.6473 -1.3726 16 6 3.6035 -5.1725 -2.4963 17 6 3.4921 -3.8389 -2.8404 18 6 2.7320 -2.9890 -2.0556 19 8 2.6219 -1.6770 -2.3922 20 6 2.0783 -3.4703 -0.9223 21 1 -0.4850 0.8369 0.0736 22 1 1.9075 -3.0790 1.8493 23 1 0.2551 -2.4141 1.7863 24 1 0.0547 -4.8179 2.1005 25 1 -0.4037 -4.4650 0.4147 26 1 1.1142 -6.3572 0.3868 27 1 2.2746 -5.5043 1.4282 28 1 3.0481 -6.6901 -1.1061 29 1 4.1933 -5.8413 -3.1055 30 1 3.9958 -3.4614 -3.7182 31 1 1.9296 -1.4945 -3.0424 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -34.409860 kcal Electronic energy + Delta-G solvation = -14874.683428 eV Core-core repulsion = 12506.293923 eV Total energy + Delta-G solvation = -2368.389505 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49043 -36.29235 -35.11457 -32.63001 -30.38226 -29.46276 -27.62765 -24.81312 -22.27555 -21.89094 -20.85542 -18.51372 -17.02458 -16.38443 -15.24319 -15.01411 -14.48267 -14.29063 -13.47618 -13.14132 -12.92716 -12.47738 -11.96071 -11.76304 -11.53853 -11.18408 -10.86506 -10.77665 -10.72275 -10.33943 -10.03947 -9.90965 -9.53273 -9.00359 -8.89743 -8.29302 -7.86387 -7.56876 -5.90047 -3.85641 1.97473 2.12855 3.41174 3.44192 3.51043 4.35030 4.57531 5.15276 5.32335 5.40751 5.51304 5.68673 5.76603 5.90283 5.95117 6.11746 6.19421 6.42435 6.52116 6.62968 6.69186 6.79411 6.97112 7.03314 7.14176 7.20704 7.37762 7.64715 7.73435 7.85508 8.03899 8.46762 8.74894 9.12362 9.71655 11.18839 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.012316 C = 0.009387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.507242 B = 2272.938548 C = 2982.076078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.466 4.466 8 H 0.051 0.949 9 C 0.069 3.931 10 H 0.068 0.932 11 C -0.101 4.101 12 C -0.123 4.123 13 C -0.071 4.071 14 C -0.084 4.084 15 C -0.143 4.143 16 C -0.130 4.130 17 C -0.171 4.171 18 C 0.124 3.876 19 O -0.464 6.464 20 C -0.061 4.061 21 H 0.259 0.741 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 -8.715 -2.707 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.051 3.949 10 H 0.086 0.914 11 C -0.139 4.139 12 C -0.161 4.161 13 C -0.108 4.108 14 C -0.085 4.085 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.189 4.189 18 C 0.079 3.921 19 O -0.272 6.272 20 C -0.062 4.062 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.652 -8.497 -2.377 9.213 hybrid contribution 0.240 0.863 -0.418 0.989 sum 2.892 -7.633 -2.795 8.628 Atomic orbital electron populations 1.69887 1.05802 1.26697 1.52141 1.24825 0.94678 0.98751 0.95416 0.86687 0.79540 0.83270 0.78630 1.20093 1.21797 1.20729 1.20798 0.92829 0.89337 1.47422 0.93027 1.17856 0.95597 0.90974 0.90463 0.91429 1.21643 0.99388 0.92662 1.00211 1.21663 0.97297 0.97519 0.99623 1.20377 0.97628 0.97902 0.94927 1.19613 0.98750 0.93175 0.96924 1.20976 0.99892 0.98926 0.96304 1.20638 1.01258 0.95036 0.97864 1.21361 1.02713 0.93949 1.00912 1.18547 0.95921 0.83790 0.93854 1.85090 1.57867 1.20296 1.63944 1.20954 0.96203 0.93208 0.95801 0.93135 0.93695 0.92045 0.93138 0.92429 0.92159 0.91565 0.87321 0.87098 0.86762 0.77372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 12.84 55.43 0.71 -25.06 16 2 C 0.06 1.73 5.45 -17.82 -0.10 1.64 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.47 -12.68 5.56 -34.44 -0.19 -12.87 16 8 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.07 1.70 2.13 -93.10 -0.20 1.51 16 10 H 0.07 1.84 7.38 -51.93 -0.38 1.46 16 11 C -0.10 -2.26 5.24 -26.71 -0.14 -2.40 16 12 C -0.12 -2.25 5.98 -26.70 -0.16 -2.41 16 13 C -0.07 -1.20 5.67 -28.05 -0.16 -1.36 16 14 C -0.08 -1.63 5.74 -104.63 -0.60 -2.23 16 15 C -0.14 -2.42 9.60 -39.42 -0.38 -2.80 16 16 C -0.13 -2.14 10.04 -39.71 -0.40 -2.54 16 17 C -0.17 -3.10 9.98 -39.53 -0.39 -3.50 16 18 C 0.12 2.64 6.42 -39.08 -0.25 2.39 16 19 O -0.46 -10.22 10.74 -19.42 -0.21 -10.42 16 20 C -0.06 -1.35 5.43 -104.47 -0.57 -1.92 16 21 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 22 H 0.04 1.01 8.08 -51.92 -0.42 0.59 16 23 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 26 H 0.06 0.87 8.12 -51.92 -0.42 0.45 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.11 1.53 8.05 -52.49 -0.42 1.11 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.37 6.80 9.06 45.56 0.41 7.21 16 LS Contribution 257.16 15.07 3.88 3.88 Total: -1.00 -29.50 257.16 -7.49 -37.00 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.31 Total: 4.21 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -3.54 Total: -26.48 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.71 Total: -25.06 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.21 Total: -10.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.50 -7.49 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.586 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds