Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99710 * 2 1 4 4 H 1.48499 * 109.46855 * 240.00245 * 3 2 1 5 5 H 1.48497 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47079 * 120.00290 * 3 2 1 7 7 C 1.37876 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99891 * 185.22669 * 7 2 1 9 9 C 1.50695 * 119.99661 * 5.22519 * 7 2 1 10 10 H 1.08999 * 109.21888 * 25.39287 * 9 7 2 11 11 C 1.52727 * 109.25632 * 265.94346 * 9 7 2 12 12 C 1.53320 * 108.39916 * 188.61425 * 11 9 7 13 13 C 1.52731 * 108.38939 * 69.78259 * 12 11 9 14 14 C 1.50637 * 110.59461 * 308.83817 * 13 12 11 15 15 C 1.38958 * 117.73820 * 197.71247 * 14 13 12 16 16 C 1.37955 * 120.66598 * 180.58197 * 15 14 13 17 17 C 1.38178 * 119.83039 * 0.02562 * 16 15 14 18 18 C 1.38428 * 119.71105 * 359.87390 * 17 16 15 19 19 O 1.35898 * 119.78980 * 179.97438 * 18 17 16 20 20 C 1.37571 * 122.54666 * 18.04604 * 14 13 12 21 21 H 0.97005 * 120.00063 * 354.97587 * 1 2 3 22 22 H 1.09007 * 109.68156 * 308.34213 * 11 9 7 23 23 H 1.09006 * 109.68035 * 68.84986 * 11 9 7 24 24 H 1.09000 * 109.68396 * 189.51139 * 12 11 9 25 25 H 1.09004 * 109.67610 * 310.02807 * 12 11 9 26 26 H 1.09007 * 109.24949 * 188.54959 * 13 12 11 27 27 H 1.09000 * 109.25157 * 69.12835 * 13 12 11 28 28 H 1.07997 * 119.66685 * 0.60971 * 15 14 13 29 29 H 1.07995 * 120.08718 * 180.02562 * 16 15 14 30 30 H 1.08006 * 120.14234 * 179.89306 * 17 16 15 31 31 H 0.96707 * 114.00026 * 84.61834 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0847 9 6 1.2558 -2.4963 -0.1200 10 1 0.3088 -2.3202 -0.6301 11 6 0.9803 -3.0488 1.2769 12 6 0.4156 -4.4670 1.1337 13 6 1.5331 -5.3828 0.6386 14 6 2.1969 -4.7975 -0.5805 15 6 2.9593 -5.6473 -1.3726 16 6 3.6035 -5.1725 -2.4963 17 6 3.4921 -3.8389 -2.8404 18 6 2.7320 -2.9890 -2.0556 19 8 2.6219 -1.6770 -2.3922 20 6 2.0783 -3.4703 -0.9223 21 1 -0.4850 0.8369 0.0736 22 1 1.9075 -3.0790 1.8493 23 1 0.2551 -2.4141 1.7863 24 1 0.0547 -4.8179 2.1005 25 1 -0.4037 -4.4650 0.4147 26 1 1.1142 -6.3572 0.3868 27 1 2.2746 -5.5043 1.4282 28 1 3.0481 -6.6901 -1.1061 29 1 4.1933 -5.8413 -3.1055 30 1 3.9958 -3.4614 -3.7182 31 1 1.9296 -1.4945 -3.0424 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -52.511068 kcal Electronic energy + Delta-G solvation = -14875.468355 eV Core-core repulsion = 12506.293923 eV Total energy + Delta-G solvation = -2369.174432 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.00658 -37.88668 -36.71565 -34.54685 -32.11511 -30.95355 -29.20824 -26.71895 -23.89681 -23.41815 -22.44945 -20.09991 -18.61135 -18.43361 -16.90226 -16.50100 -16.19330 -15.97533 -14.98289 -14.69824 -14.42585 -14.33277 -13.68999 -13.27144 -13.12863 -12.88166 -12.61477 -12.51471 -12.40424 -12.07524 -11.79814 -11.54188 -11.33350 -10.91516 -10.63648 -10.32449 -9.29518 -9.13923 -8.02301 -6.02426 0.54405 0.67210 1.39751 1.42372 1.50409 2.49105 2.93111 3.26400 3.70791 3.99727 4.11893 4.30202 4.36085 4.49793 4.59071 4.66269 4.77799 4.99011 4.99904 5.13327 5.19244 5.25257 5.42229 5.44852 5.58304 5.66517 5.70270 5.82360 5.93987 6.10841 6.21841 6.44649 6.98162 7.20373 7.55997 9.05452 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030378 B = 0.012316 C = 0.009387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.507242 B = 2272.938548 C = 2982.076078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.019 3.981 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.465 4.465 8 H 0.030 0.970 9 C 0.073 3.927 10 H 0.028 0.972 11 C -0.098 4.098 12 C -0.116 4.116 13 C -0.069 4.069 14 C -0.092 4.092 15 C -0.137 4.137 16 C -0.117 4.117 17 C -0.172 4.172 18 C 0.093 3.907 19 O -0.488 6.488 20 C -0.102 4.102 21 H 0.258 0.742 22 H 0.038 0.962 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.134 0.866 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -11.311 -3.076 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.503 4.503 8 H 0.048 0.952 9 C 0.055 3.945 10 H 0.046 0.954 11 C -0.136 4.136 12 C -0.153 4.153 13 C -0.106 4.106 14 C -0.092 4.092 15 C -0.155 4.155 16 C -0.135 4.135 17 C -0.191 4.191 18 C 0.048 3.952 19 O -0.297 6.297 20 C -0.103 4.103 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.151 0.849 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.932 -11.098 -2.746 12.090 hybrid contribution -0.106 1.583 -0.353 1.625 sum 3.826 -9.515 -3.099 10.714 Atomic orbital electron populations 1.69997 1.06819 1.27062 1.53601 1.25395 0.95327 1.01331 0.95693 0.85869 0.78499 0.80350 0.78379 1.20194 1.21177 1.20506 1.20908 0.91781 0.91126 1.46488 0.95178 1.17634 0.94040 0.91174 0.91702 0.95417 1.21479 0.98479 0.95227 0.98384 1.21573 0.97670 0.94990 1.01065 1.20449 0.97144 0.98672 0.94302 1.19956 0.99004 0.92184 0.98094 1.21400 0.98209 1.00406 0.95474 1.21157 1.00112 0.94564 0.97667 1.21585 1.01899 0.94554 1.01022 1.18888 0.97606 0.83844 0.94819 1.85015 1.58375 1.21769 1.64587 1.20824 0.98151 0.94441 0.96844 0.93320 0.94314 0.94910 0.90395 0.93236 0.88540 0.90200 0.83306 0.82916 0.84857 0.76475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 12.84 21.45 0.28 -55.11 16 2 C 0.02 1.08 5.45 84.65 0.46 1.54 16 3 Si 0.94 46.27 29.54 68.60 2.03 48.30 16 4 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.46 -26.40 5.56 25.60 0.14 -26.26 16 8 H 0.03 1.80 7.82 -2.91 -0.02 1.78 16 9 C 0.07 3.74 2.13 -12.40 -0.03 3.71 16 10 H 0.03 1.61 7.38 -2.39 -0.02 1.60 16 11 C -0.10 -4.48 5.24 30.61 0.16 -4.32 16 12 C -0.12 -4.07 5.98 30.61 0.18 -3.89 16 13 C -0.07 -2.09 5.67 29.74 0.17 -1.92 16 14 C -0.09 -3.33 5.74 -19.87 -0.11 -3.45 16 15 C -0.14 -4.01 9.60 22.38 0.21 -3.79 16 16 C -0.12 -3.34 10.04 22.19 0.22 -3.11 16 17 C -0.17 -5.88 9.98 22.30 0.22 -5.66 16 18 C 0.09 3.98 6.42 22.60 0.15 4.13 16 19 O -0.49 -22.32 10.74 -92.40 -0.99 -23.31 16 20 C -0.10 -4.54 5.43 -19.77 -0.11 -4.65 16 21 H 0.26 14.71 8.32 -92.70 -0.77 13.94 16 22 H 0.04 1.77 8.08 -2.38 -0.02 1.75 16 23 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 26 H 0.10 2.28 8.12 -2.38 -0.02 2.26 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.15 3.19 8.05 -2.91 -0.02 3.16 16 29 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.38 14.78 9.06 -74.05 -0.67 14.11 16 Total: -1.00 -66.29 257.16 3.43 -62.85 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.45 Total: 14.94 kcal Atomic # 6 Polarization: -49.34 SS G_CDS: 1.67 Total: -47.67 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.28 Total: -55.11 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.99 Total: -23.31 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -66.29 3.43 -62.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.344 kcal (2) G-P(sol) polarization free energy of solvation -66.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds