Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 C 1.38340 * 120.04040 * 265.00163 * 11 10 9 13 13 C 1.38218 * 120.03922 * 179.97438 * 12 11 10 14 14 C 1.38339 * 120.04270 * 0.02562 * 13 12 11 15 15 C 1.37916 * 119.92172 * 359.97438 * 14 13 12 16 16 C 1.37924 * 120.04518 * 84.72434 * 11 10 9 17 17 C 1.51082 * 132.68781 * 0.02604 * 16 11 10 18 18 O 1.43938 * 105.95765 * 197.69818 * 17 16 11 19 19 C 1.44334 * 104.75554 * 331.07264 * 18 17 16 20 20 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 23 23 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 24 24 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 25 25 H 1.07998 * 119.97782 * 359.95224 * 12 11 10 26 26 H 1.08007 * 119.97783 * 179.97438 * 13 12 11 27 27 H 1.08008 * 120.03672 * 179.97438 * 14 13 12 28 28 H 1.09005 * 110.15754 * 316.81979 * 17 16 11 29 29 H 1.08998 * 110.15488 * 78.56830 * 17 16 11 30 30 H 1.09002 * 110.77258 * 269.61480 * 19 18 17 31 31 H 1.09005 * 109.66419 * 147.77925 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 6 1.2365 -5.6188 1.1945 13 6 0.5449 -6.8155 1.1951 14 6 0.1079 -7.3635 0.0024 15 6 0.3626 -6.7139 -1.1873 16 6 1.0512 -5.5107 -1.1874 17 6 1.1605 -5.0566 -2.6242 18 8 0.1653 -5.8004 -3.3510 19 6 0.0293 -7.0400 -2.6243 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8721 -3.6042 -0.8894 24 1 2.8721 -3.6043 0.8905 25 1 1.5779 -5.1922 2.1261 26 1 0.3464 -7.3236 2.1273 27 1 -0.4321 -8.2989 0.0029 28 1 0.9581 -3.9880 -2.6969 29 1 2.1541 -5.2785 -3.0137 30 1 0.7193 -7.7911 -3.0087 31 1 -0.9973 -7.3986 -2.6997 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088582.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -30.969693 kcal Electronic energy + Delta-G solvation = -14125.877457 eV Core-core repulsion = 11757.637129 eV Total energy + Delta-G solvation = -2368.240328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.39748 -37.23455 -34.19535 -32.25996 -31.00335 -29.38210 -27.55122 -25.22277 -24.06861 -21.58410 -21.28281 -19.65600 -16.51185 -16.22244 -16.06490 -15.73037 -15.09921 -14.48498 -13.78042 -13.65873 -12.95272 -12.71356 -12.53039 -12.24537 -12.22023 -11.73291 -11.29207 -11.11023 -10.89823 -10.71073 -10.40791 -9.94582 -9.83487 -9.62323 -9.10564 -8.37194 -8.29892 -8.15230 -6.01352 -4.04994 1.52869 1.66341 3.30250 3.37850 3.41564 3.95942 4.15619 4.44460 4.49915 4.92852 5.17987 5.28537 5.34172 5.44992 5.47174 5.70313 5.73785 5.79929 5.97022 6.09366 6.28677 6.33643 6.57166 6.59857 6.69684 6.84015 6.95440 7.04898 7.27658 7.65517 7.77265 7.97835 8.37646 9.02140 9.59423 11.09594 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.007154 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.972926 B = 3913.056870 C = 4331.620314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.082 4.082 11 C -0.031 4.031 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.138 4.138 16 C -0.128 4.128 17 C 0.089 3.911 18 O -0.364 6.364 19 C 0.093 3.907 20 H 0.260 0.740 21 H 0.018 0.982 22 H 0.017 0.983 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.126 0.874 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -13.821 -1.115 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.120 4.120 11 C -0.032 4.032 12 C -0.135 4.135 13 C -0.134 4.134 14 C -0.131 4.131 15 C -0.138 4.138 16 C -0.128 4.128 17 C 0.013 3.987 18 O -0.282 6.282 19 C 0.016 3.984 20 H 0.070 0.930 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.331 -13.632 -1.323 13.760 hybrid contribution 0.440 0.878 0.311 1.030 sum 1.771 -12.753 -1.013 12.915 Atomic orbital electron populations 1.69985 1.06063 1.26563 1.50576 1.25029 0.94839 0.99279 0.95250 0.86537 0.80094 0.83769 0.77616 1.19711 1.20967 1.21005 1.21272 0.93077 0.90884 1.50901 0.92508 1.19060 0.93608 0.90371 0.97597 1.20871 0.98465 0.91145 1.01484 1.19723 0.96389 0.96167 0.90876 1.21101 0.99523 0.95121 0.97706 1.21044 0.98718 0.96270 0.97410 1.20195 1.01820 1.00163 0.90931 1.20990 1.00692 0.96551 0.95542 1.20800 1.00245 0.96150 0.95581 1.21780 0.92035 0.98213 0.86625 1.89149 1.60468 1.29211 1.49409 1.21734 1.01897 0.87832 0.86909 0.92990 0.96396 0.96428 0.92119 0.92011 0.85595 0.85989 0.86440 0.87514 0.90952 0.90976 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 10 C -0.08 -1.70 5.16 -27.88 -0.14 -1.84 16 11 C -0.03 -0.59 5.13 -104.70 -0.54 -1.12 16 12 C -0.12 -1.92 9.69 -39.55 -0.38 -2.30 16 13 C -0.12 -1.65 10.05 -39.55 -0.40 -2.05 16 14 C -0.11 -1.58 10.04 -39.66 -0.40 -1.98 16 15 C -0.14 -2.15 6.32 -104.41 -0.66 -2.81 16 16 C -0.13 -2.27 6.11 -104.40 -0.64 -2.91 16 17 C 0.09 1.52 7.30 36.19 0.26 1.78 16 18 O -0.36 -6.13 11.75 -35.23 -0.41 -6.55 16 19 C 0.09 1.27 7.64 36.19 0.28 1.55 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 21 H 0.02 0.49 7.87 -51.93 -0.41 0.08 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.21 7.97 -51.93 -0.41 0.79 16 24 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 25 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 26 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 27 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.11 1.97 7.88 -51.93 -0.41 1.56 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 267.41 15.07 4.03 4.03 Total: -1.00 -31.05 267.41 -7.99 -39.03 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.15 Total: -2.34 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.17 Total: -24.50 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.41 Total: -6.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.05 -7.99 -39.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088582.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.063 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds