Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 C 1.38340 * 120.04040 * 265.00163 * 11 10 9 13 13 C 1.38218 * 120.03922 * 179.97438 * 12 11 10 14 14 C 1.38339 * 120.04270 * 0.02562 * 13 12 11 15 15 C 1.37916 * 119.92172 * 359.97438 * 14 13 12 16 16 C 1.37924 * 120.04518 * 84.72434 * 11 10 9 17 17 C 1.51082 * 132.68781 * 0.02604 * 16 11 10 18 18 O 1.43938 * 105.95765 * 197.69818 * 17 16 11 19 19 C 1.44334 * 104.75554 * 331.07264 * 18 17 16 20 20 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 23 23 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 24 24 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 25 25 H 1.07998 * 119.97782 * 359.95224 * 12 11 10 26 26 H 1.08007 * 119.97783 * 179.97438 * 13 12 11 27 27 H 1.08008 * 120.03672 * 179.97438 * 14 13 12 28 28 H 1.09005 * 110.15754 * 316.81979 * 17 16 11 29 29 H 1.08998 * 110.15488 * 78.56830 * 17 16 11 30 30 H 1.09002 * 110.77258 * 269.61480 * 19 18 17 31 31 H 1.09005 * 109.66419 * 147.77925 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 6 1.2365 -5.6188 1.1945 13 6 0.5449 -6.8155 1.1951 14 6 0.1079 -7.3635 0.0024 15 6 0.3626 -6.7139 -1.1873 16 6 1.0512 -5.5107 -1.1874 17 6 1.1605 -5.0566 -2.6242 18 8 0.1653 -5.8004 -3.3510 19 6 0.0293 -7.0400 -2.6243 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8721 -3.6042 -0.8894 24 1 2.8721 -3.6043 0.8905 25 1 1.5779 -5.1922 2.1261 26 1 0.3464 -7.3236 2.1273 27 1 -0.4321 -8.2989 0.0029 28 1 0.9581 -3.9880 -2.6969 29 1 2.1541 -5.2785 -3.0137 30 1 0.7193 -7.7911 -3.0087 31 1 -0.9973 -7.3986 -2.6997 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088582.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -49.354718 kcal Electronic energy + Delta-G solvation = -14126.674692 eV Core-core repulsion = 11757.637129 eV Total energy + Delta-G solvation = -2369.037563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.62828 -38.50137 -36.00890 -34.11283 -32.22424 -31.04758 -28.87582 -26.96082 -25.44783 -23.39457 -22.49683 -21.09656 -18.57236 -17.49508 -17.31992 -17.03067 -16.54926 -16.25962 -15.18822 -15.00220 -14.55264 -14.30736 -14.03091 -13.80469 -13.47370 -13.15024 -13.03208 -12.88855 -12.47226 -12.31434 -11.88986 -11.72478 -11.61584 -11.17968 -11.02116 -10.58596 -9.52071 -9.48053 -8.21641 -6.34309 0.31336 0.42005 1.39362 1.39726 1.53278 2.39461 2.73507 2.95294 3.11253 3.31884 3.71508 3.98931 4.09781 4.35666 4.38091 4.44586 4.50060 4.59231 4.67163 4.77093 4.82018 4.95783 5.00965 5.23034 5.36008 5.46147 5.46181 5.53153 5.68524 5.81094 5.84235 6.05157 6.19980 6.82776 7.35563 8.90155 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.007154 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.972926 B = 3913.056870 C = 4331.620314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.040 3.960 10 C -0.067 4.067 11 C -0.062 4.062 12 C -0.131 4.131 13 C -0.110 4.110 14 C -0.105 4.105 15 C -0.143 4.143 16 C -0.155 4.155 17 C 0.092 3.908 18 O -0.384 6.384 19 C 0.090 3.910 20 H 0.264 0.736 21 H -0.013 1.013 22 H -0.012 1.012 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.159 0.841 27 H 0.158 0.842 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 -15.381 -0.736 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.003 3.997 10 C -0.105 4.105 11 C -0.062 4.062 12 C -0.149 4.149 13 C -0.128 4.128 14 C -0.122 4.122 15 C -0.143 4.143 16 C -0.155 4.155 17 C 0.016 3.984 18 O -0.303 6.303 19 C 0.014 3.986 20 H 0.072 0.928 21 H 0.005 0.995 22 H 0.006 0.994 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.150 0.850 26 H 0.177 0.823 27 H 0.176 0.824 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.786 -15.208 -0.943 15.342 hybrid contribution 0.236 1.262 0.204 1.300 sum 2.022 -13.946 -0.739 14.111 Atomic orbital electron populations 1.70127 1.07944 1.27760 1.51568 1.26020 0.95744 1.03505 0.94607 0.85365 0.79140 0.78552 0.77793 1.18326 1.20424 1.20293 1.21724 0.93660 0.92085 1.50667 0.91791 1.18859 0.93896 0.92366 0.94547 1.20571 0.97367 0.90779 1.01747 1.19622 0.98271 0.95871 0.92422 1.21320 1.00182 0.96283 0.97100 1.21477 0.96945 0.95095 0.99257 1.20699 1.00506 1.01094 0.89926 1.21364 1.00001 0.95750 0.97232 1.20968 1.01482 0.97661 0.95420 1.21682 0.92983 0.96747 0.87020 1.89111 1.60517 1.30702 1.49952 1.22033 1.04053 0.86994 0.85497 0.92765 0.99512 0.99397 0.92017 0.91411 0.84998 0.82313 0.82420 0.90529 0.89173 0.88159 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.20 4.96 29.85 0.15 2.35 16 10 C -0.07 -2.88 5.16 29.85 0.15 -2.73 16 11 C -0.06 -2.34 5.13 -19.91 -0.10 -2.44 16 12 C -0.13 -4.21 9.69 22.29 0.22 -3.99 16 13 C -0.11 -2.79 10.05 22.29 0.22 -2.57 16 14 C -0.10 -2.54 10.04 22.22 0.22 -2.32 16 15 C -0.14 -4.19 6.32 -19.72 -0.12 -4.31 16 16 C -0.16 -5.55 6.11 -19.72 -0.12 -5.67 16 17 C 0.09 3.20 7.30 71.36 0.52 3.72 16 18 O -0.38 -12.78 11.75 -148.98 -1.75 -14.53 16 19 C 0.09 2.25 7.64 71.36 0.55 2.79 16 20 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 21 H -0.01 -0.81 7.87 -2.39 -0.02 -0.83 16 22 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 23 H 0.06 2.55 7.97 -2.39 -0.02 2.53 16 24 H 0.07 2.74 8.05 -2.39 -0.02 2.72 16 25 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 26 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 28 H 0.08 3.06 7.88 -2.38 -0.02 3.04 16 29 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -68.89 267.41 4.04 -64.85 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.10 Total: 6.69 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 2.38 Total: -45.92 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.28 Total: -57.82 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.75 Total: -14.53 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.89 4.04 -64.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088582.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.492 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds