Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38166 * 119.97454 * 2 1 4 4 C 1.38707 * 119.94143 * 179.74571 * 3 2 1 5 5 O 1.35899 * 120.05686 * 180.27296 * 4 3 2 6 6 C 1.38759 * 119.89337 * 0.25731 * 4 3 2 7 7 C 1.38121 * 119.93830 * 359.97438 * 6 4 3 8 8 C 1.38253 * 119.96809 * 180.25331 * 2 1 3 9 9 C 1.50699 * 119.94549 * 0.02562 * 8 2 1 10 10 C 1.50697 * 115.55031 * 61.08476 * 9 8 2 11 11 H 1.08006 * 120.00141 * 269.29729 * 10 9 8 12 12 C 1.37874 * 119.99924 * 89.30069 * 10 9 8 13 13 N 1.31524 * 120.00090 * 184.92234 * 12 10 9 14 14 Si 1.86795 * 120.00242 * 4.92095 * 12 10 9 15 15 H 1.48504 * 109.47349 * 84.48375 * 14 12 10 16 16 H 1.48501 * 109.47358 * 204.48704 * 14 12 10 17 17 H 1.48504 * 109.46902 * 324.48686 * 14 12 10 18 18 C 1.53006 * 117.49782 * 275.41607 * 9 8 2 19 19 C 1.53003 * 117.49695 * 206.75920 * 9 8 2 20 20 H 1.09000 * 109.47302 * 95.31322 * 1 2 3 21 21 H 1.08999 * 109.47385 * 215.31989 * 1 2 3 22 22 H 1.09008 * 109.46919 * 335.32014 * 1 2 3 23 23 H 1.07990 * 120.02771 * 0.02562 * 3 2 1 24 24 H 0.96702 * 114.00002 * 90.00421 * 5 4 3 25 25 H 1.07994 * 120.03152 * 179.97438 * 6 4 3 26 26 H 1.08003 * 119.96890 * 180.02562 * 7 6 4 27 27 H 0.96990 * 119.99709 * 179.97438 * 13 12 10 28 28 H 1.09004 * 117.49396 * 359.97438 * 18 9 8 29 29 H 1.08993 * 117.50180 * 145.01859 * 18 9 8 30 30 H 1.08996 * 117.49242 * 214.97567 * 19 9 8 31 31 H 1.09000 * 117.49678 * 359.97436 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5843 1.1961 0.0053 5 8 4.2657 2.3719 0.0110 6 6 4.2752 -0.0073 0.0053 7 6 3.5804 -1.2010 0.0004 8 6 2.1976 -1.1977 -0.0053 9 6 1.4421 -2.5016 -0.0116 10 6 0.5479 -2.7289 -1.2032 11 1 -0.4842 -2.4123 -1.1720 12 6 1.0474 -3.3412 -2.3330 13 7 0.2964 -3.4528 -3.4070 14 14 2.7906 -4.0123 -2.3386 15 1 2.7971 -5.3781 -1.7554 16 1 3.2954 -4.0675 -3.7340 17 1 3.6652 -3.1249 -1.5305 18 6 0.9766 -3.0549 1.3368 19 6 2.1363 -3.7232 0.5940 20 1 -0.3634 -0.0952 -1.0232 21 1 -0.3634 -0.8385 0.5941 22 1 -0.3633 0.9339 0.4291 23 1 1.6574 2.1321 0.0004 24 1 4.4595 2.7099 0.8960 25 1 5.3551 -0.0105 0.0090 26 1 4.1177 -2.1380 0.0008 27 1 0.6479 -3.8832 -4.2019 28 1 1.2172 -2.4759 2.2284 29 1 0.0238 -3.5837 1.3620 30 1 1.9459 -4.6913 0.1308 31 1 3.1396 -3.5837 0.9967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260114685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = 1.716938 kcal Electronic energy + Delta-G solvation = -14696.737227 eV Core-core repulsion = 12329.914298 eV Total energy + Delta-G solvation = -2366.822930 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52027 -37.44053 -35.31326 -32.19310 -31.89076 -29.04717 -26.31454 -25.77749 -22.69078 -21.61074 -20.82615 -19.18389 -17.54501 -16.75495 -15.34613 -15.12275 -14.84451 -14.42620 -13.92699 -13.03476 -12.81324 -12.67024 -12.55226 -11.90114 -11.73307 -11.26373 -11.15554 -11.02976 -10.71365 -10.40274 -10.19142 -9.88409 -9.57415 -9.37806 -8.71555 -8.48731 -8.17184 -7.59562 -6.14184 -4.17312 1.86438 1.93774 3.29707 3.40716 3.43875 4.18485 4.42508 4.61403 4.87583 5.17070 5.45284 5.47129 5.61007 5.84808 5.97051 5.99651 6.12169 6.24807 6.41377 6.42363 6.46272 6.50689 6.63543 6.72005 6.93325 6.99865 7.05402 7.15196 7.44568 7.48647 7.69057 8.03170 8.44186 8.86940 9.48820 10.96446 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.011649 C = 0.010951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.767618 B = 2403.001957 C = 2556.176143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.051 4.051 3 C -0.151 4.151 4 C 0.076 3.924 5 O -0.503 6.503 6 C -0.156 4.156 7 C -0.111 4.111 8 C -0.022 4.022 9 C 0.036 3.964 10 C -0.482 4.482 11 H 0.083 0.917 12 C 0.079 3.921 13 N -0.894 5.894 14 Si 0.874 3.126 15 H -0.279 1.279 16 H -0.298 1.298 17 H -0.247 1.247 18 C -0.173 4.173 19 C -0.205 4.205 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.119 0.881 24 H 0.378 0.622 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.265 0.735 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 5.827 8.927 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.051 4.051 3 C -0.169 4.169 4 C 0.032 3.968 5 O -0.312 6.312 6 C -0.175 4.175 7 C -0.129 4.129 8 C -0.023 4.023 9 C 0.036 3.964 10 C -0.519 4.519 11 H 0.101 0.899 12 C -0.124 4.124 13 N -0.530 5.530 14 Si 0.702 3.298 15 H -0.205 1.205 16 H -0.226 1.226 17 H -0.171 1.171 18 C -0.210 4.210 19 C -0.242 4.242 20 H 0.099 0.901 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.137 0.863 24 H 0.232 0.768 25 H 0.134 0.866 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.073 5.700 8.106 11.132 hybrid contribution 1.128 -0.387 0.200 1.209 sum 6.201 5.313 8.306 11.648 Atomic orbital electron populations 1.20752 0.90820 1.00876 1.03474 1.19576 0.96538 0.91403 0.97590 1.21171 0.93139 0.98036 1.04574 1.18309 0.89901 0.84621 1.03953 1.84838 1.76635 1.37005 1.32699 1.21214 0.99523 0.92125 1.04615 1.21078 0.94253 0.97256 1.00322 1.19747 0.92396 0.95092 0.95049 1.18168 0.97271 0.87103 0.93899 1.20223 0.96930 1.39153 0.95567 0.89874 1.24989 0.97401 0.95047 0.94936 1.69887 1.37230 1.43086 1.02818 0.86986 0.86069 0.80039 0.76702 1.20525 1.22551 1.17130 1.22885 0.98257 1.04446 0.95382 1.23059 0.95713 0.99087 1.06322 0.90137 0.90713 0.93664 0.86310 0.76792 0.86593 0.85940 0.92484 0.90929 0.89247 0.89205 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 8.41 36.00 0.30 -1.59 16 2 C -0.05 -1.01 5.84 -104.64 -0.61 -1.62 16 3 C -0.15 -2.70 9.62 -39.43 -0.38 -3.08 16 4 C 0.08 1.33 6.70 -39.22 -0.26 1.07 16 5 O -0.50 -7.53 13.50 -19.42 -0.26 -7.79 16 6 C -0.16 -2.80 9.99 -39.43 -0.39 -3.19 16 7 C -0.11 -2.21 8.17 -39.61 -0.32 -2.53 16 8 C -0.02 -0.47 5.09 -104.60 -0.53 -1.01 16 9 C 0.04 0.82 0.19 -156.81 -0.03 0.79 16 10 C -0.48 -12.80 8.13 -34.44 -0.28 -13.08 16 11 H 0.08 2.36 7.51 -52.48 -0.39 1.97 16 12 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 13 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 14 Si 0.87 21.37 24.85 -169.99 -4.22 17.15 16 15 H -0.28 -6.66 6.90 56.52 0.39 -6.27 16 16 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 17 H -0.25 -5.65 4.16 56.52 0.24 -5.42 16 18 C -0.17 -3.37 9.36 -26.69 -0.25 -3.62 16 19 C -0.20 -4.23 6.88 -26.69 -0.18 -4.41 16 20 H 0.08 1.63 7.82 -51.93 -0.41 1.23 16 21 H 0.07 1.40 6.60 -51.93 -0.34 1.06 16 22 H 0.04 0.69 8.05 -51.92 -0.42 0.27 16 23 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 24 H 0.38 3.60 9.06 45.56 0.41 4.01 16 25 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 26 H 0.12 2.37 5.36 -52.48 -0.28 2.09 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 1.95 6.49 -51.93 -0.34 1.61 16 31 H 0.07 1.41 6.87 -51.93 -0.36 1.05 16 LS Contribution 252.80 15.07 3.81 3.81 Total: -1.00 -30.16 252.80 -6.07 -36.23 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.13 Total: 6.68 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -3.04 Total: -30.15 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.93 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.26 Total: -7.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.22 Total: 17.15 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.16 -6.07 -36.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260114685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.950 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds