Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38166 * 119.97454 * 2 1 4 4 C 1.38707 * 119.94143 * 179.74571 * 3 2 1 5 5 O 1.35899 * 120.05686 * 180.27296 * 4 3 2 6 6 C 1.38759 * 119.89337 * 0.25731 * 4 3 2 7 7 C 1.38121 * 119.93830 * 359.97438 * 6 4 3 8 8 C 1.38253 * 119.96809 * 180.25331 * 2 1 3 9 9 C 1.50699 * 119.94549 * 0.02562 * 8 2 1 10 10 C 1.50697 * 115.55031 * 61.08476 * 9 8 2 11 11 H 1.08006 * 120.00141 * 269.29729 * 10 9 8 12 12 C 1.37874 * 119.99924 * 89.30069 * 10 9 8 13 13 N 1.31524 * 120.00090 * 184.92234 * 12 10 9 14 14 Si 1.86795 * 120.00242 * 4.92095 * 12 10 9 15 15 H 1.48504 * 109.47349 * 84.48375 * 14 12 10 16 16 H 1.48501 * 109.47358 * 204.48704 * 14 12 10 17 17 H 1.48504 * 109.46902 * 324.48686 * 14 12 10 18 18 C 1.53006 * 117.49782 * 275.41607 * 9 8 2 19 19 C 1.53003 * 117.49695 * 206.75920 * 9 8 2 20 20 H 1.09000 * 109.47302 * 95.31322 * 1 2 3 21 21 H 1.08999 * 109.47385 * 215.31989 * 1 2 3 22 22 H 1.09008 * 109.46919 * 335.32014 * 1 2 3 23 23 H 1.07990 * 120.02771 * 0.02562 * 3 2 1 24 24 H 0.96702 * 114.00002 * 90.00421 * 5 4 3 25 25 H 1.07994 * 120.03152 * 179.97438 * 6 4 3 26 26 H 1.08003 * 119.96890 * 180.02562 * 7 6 4 27 27 H 0.96990 * 119.99709 * 179.97438 * 13 12 10 28 28 H 1.09004 * 117.49396 * 359.97438 * 18 9 8 29 29 H 1.08993 * 117.50180 * 145.01859 * 18 9 8 30 30 H 1.08996 * 117.49242 * 214.97567 * 19 9 8 31 31 H 1.09000 * 117.49678 * 359.97436 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5843 1.1961 0.0053 5 8 4.2657 2.3719 0.0110 6 6 4.2752 -0.0073 0.0053 7 6 3.5804 -1.2010 0.0004 8 6 2.1976 -1.1977 -0.0053 9 6 1.4421 -2.5016 -0.0116 10 6 0.5479 -2.7289 -1.2032 11 1 -0.4842 -2.4123 -1.1720 12 6 1.0474 -3.3412 -2.3330 13 7 0.2964 -3.4528 -3.4070 14 14 2.7906 -4.0123 -2.3386 15 1 2.7971 -5.3781 -1.7554 16 1 3.2954 -4.0675 -3.7340 17 1 3.6652 -3.1249 -1.5305 18 6 0.9766 -3.0549 1.3368 19 6 2.1363 -3.7232 0.5940 20 1 -0.3634 -0.0952 -1.0232 21 1 -0.3634 -0.8385 0.5941 22 1 -0.3633 0.9339 0.4291 23 1 1.6574 2.1321 0.0004 24 1 4.4595 2.7099 0.8960 25 1 5.3551 -0.0105 0.0090 26 1 4.1177 -2.1380 0.0008 27 1 0.6479 -3.8832 -4.2019 28 1 1.2172 -2.4759 2.2284 29 1 0.0238 -3.5837 1.3620 30 1 1.9459 -4.6913 0.1308 31 1 3.1396 -3.5837 0.9967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260114685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = -18.412965 kcal Electronic energy + Delta-G solvation = -14697.610126 eV Core-core repulsion = 12329.914298 eV Total energy + Delta-G solvation = -2367.695828 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95507 -38.86723 -36.77076 -34.22332 -33.37595 -30.46853 -27.79666 -27.75229 -24.23400 -23.14248 -22.30156 -20.85567 -18.81769 -18.64781 -16.99221 -16.65504 -16.42629 -15.88176 -15.39510 -14.78461 -14.66904 -14.23743 -13.94143 -13.40169 -13.31845 -13.01659 -12.83005 -12.48139 -12.36350 -12.05323 -11.86060 -11.47856 -11.24718 -11.11555 -10.67637 -10.30553 -9.60321 -9.07137 -8.27395 -6.32538 0.45778 0.50631 1.35507 1.40930 1.51302 2.39952 2.77157 3.08965 3.24672 3.40105 3.99374 4.08914 4.13224 4.36728 4.43180 4.44914 4.70429 4.80237 4.86665 4.89768 4.98910 5.04521 5.10980 5.27013 5.45821 5.49642 5.54180 5.58381 5.75969 5.97877 6.08485 6.34692 6.74904 6.96066 7.36466 8.86639 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.011649 C = 0.010951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.767618 B = 2403.001957 C = 2556.176143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.069 4.069 3 C -0.153 4.153 4 C 0.087 3.913 5 O -0.506 6.506 6 C -0.157 4.157 7 C -0.121 4.121 8 C -0.048 4.048 9 C 0.015 3.985 10 C -0.470 4.470 11 H 0.046 0.954 12 C 0.020 3.980 13 N -0.948 5.948 14 Si 0.925 3.075 15 H -0.269 1.269 16 H -0.312 1.312 17 H -0.219 1.219 18 C -0.155 4.155 19 C -0.200 4.200 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.140 0.860 24 H 0.406 0.594 25 H 0.142 0.858 26 H 0.127 0.873 27 H 0.262 0.738 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 7.101 10.852 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 C -0.171 4.171 4 C 0.043 3.957 5 O -0.318 6.318 6 C -0.175 4.175 7 C -0.139 4.139 8 C -0.049 4.049 9 C 0.014 3.986 10 C -0.507 4.507 11 H 0.064 0.936 12 C -0.177 4.177 13 N -0.587 5.587 14 Si 0.751 3.249 15 H -0.194 1.194 16 H -0.240 1.240 17 H -0.142 1.142 18 C -0.192 4.192 19 C -0.237 4.237 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.096 0.904 23 H 0.158 0.842 24 H 0.265 0.735 25 H 0.160 0.840 26 H 0.145 0.855 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.411 6.993 10.089 14.339 hybrid contribution 0.358 -0.630 -0.320 0.792 sum 7.769 6.363 9.769 14.010 Atomic orbital electron populations 1.20653 0.90782 1.02206 1.01608 1.19757 0.96868 0.91986 0.98310 1.21397 0.93754 0.98126 1.03853 1.18370 0.89799 0.85424 1.02081 1.84770 1.76083 1.35818 1.35174 1.21476 1.00871 0.91530 1.03625 1.21166 0.93656 0.98330 1.00705 1.19668 0.93196 0.94541 0.97465 1.17989 0.98244 0.88868 0.93484 1.20398 0.96165 1.37164 0.97007 0.93622 1.25791 1.01275 0.95967 0.94709 1.70039 1.39330 1.45622 1.03751 0.86159 0.82093 0.80330 0.76280 1.19447 1.23990 1.14200 1.22902 0.97832 1.03477 0.94986 1.23088 0.97331 0.97442 1.05825 0.93181 0.91752 0.90398 0.84211 0.73541 0.84006 0.85526 0.92873 0.88281 0.89746 0.90558 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.52 8.41 71.24 0.60 -2.92 16 2 C -0.07 -2.63 5.84 -19.88 -0.12 -2.75 16 3 C -0.15 -5.03 9.62 22.36 0.22 -4.82 16 4 C 0.09 2.72 6.70 22.51 0.15 2.87 16 5 O -0.51 -12.82 13.50 -92.41 -1.25 -14.06 16 6 C -0.16 -4.99 9.99 22.37 0.22 -4.77 16 7 C -0.12 -4.42 8.17 22.25 0.18 -4.23 16 8 C -0.05 -1.96 5.09 -19.85 -0.10 -2.07 16 9 C 0.01 0.66 0.19 -53.67 -0.01 0.65 16 10 C -0.47 -25.65 8.13 25.60 0.21 -25.44 16 11 H 0.05 2.75 7.51 -2.91 -0.02 2.73 16 12 C 0.02 1.15 5.47 84.65 0.46 1.61 16 13 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 14 Si 0.93 44.14 24.85 68.60 1.70 45.84 16 15 H -0.27 -12.26 6.90 99.48 0.69 -11.57 16 16 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 17 H -0.22 -9.36 4.16 99.48 0.41 -8.94 16 18 C -0.15 -5.80 9.36 30.62 0.29 -5.51 16 19 C -0.20 -7.82 6.88 30.62 0.21 -7.61 16 20 H 0.05 2.11 7.82 -2.39 -0.02 2.09 16 21 H 0.06 2.44 6.60 -2.39 -0.02 2.42 16 22 H 0.08 2.26 8.05 -2.38 -0.02 2.24 16 23 H 0.14 3.91 8.06 -2.92 -0.02 3.89 16 24 H 0.41 5.68 9.06 -74.06 -0.67 5.01 16 25 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 26 H 0.13 4.43 5.36 -2.91 -0.02 4.41 16 27 H 0.26 15.60 8.31 -92.72 -0.77 14.83 16 28 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 29 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.08 3.19 6.49 -2.39 -0.02 3.17 16 31 H 0.10 3.42 6.87 -2.39 -0.02 3.41 16 Total: -1.00 -66.25 252.80 3.22 -63.03 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.16 Total: 19.01 kcal Atomic # 6 Polarization: -57.30 SS G_CDS: 2.31 Total: -54.99 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.30 Total: -58.83 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -1.25 Total: -14.06 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.70 Total: 45.84 kcal Total: -66.25 3.22 -63.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260114685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.615 kcal (2) G-P(sol) polarization free energy of solvation -66.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds