Wall clock time and date at job start Mon Mar 30 2020 02:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 C 1.40049 * 120.37846 * 59.72309 * 12 2 1 14 14 N 1.31350 * 120.30899 * 179.75283 * 13 12 2 15 15 C 1.33814 * 120.86439 * 0.53233 * 14 13 12 16 16 N 1.32829 * 132.49946 * 179.73238 * 15 14 13 17 17 C 1.32604 * 109.75602 * 179.97438 * 16 15 14 18 18 N 1.31180 * 109.63184 * 359.97438 * 17 16 15 19 19 N 1.36660 * 120.28804 * 359.72646 * 15 14 13 20 20 C 1.35778 * 120.37953 * 240.00198 * 12 2 1 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.08005 * 119.83990 * 0.02562 * 13 12 2 26 26 H 1.08004 * 125.18653 * 179.97438 * 17 16 15 27 27 H 1.07998 * 120.49026 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0324 -0.7104 1.2304 13 6 1.6942 -2.0494 1.4628 14 7 2.1368 -2.6687 2.5332 15 6 2.9071 -2.0338 3.4244 16 7 3.4674 -2.4224 4.5643 17 6 4.1488 -1.4160 5.0947 18 7 4.0499 -0.3608 4.3216 19 7 3.2510 -0.7256 3.2300 20 6 2.8134 -0.0580 2.1292 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 1.0701 -2.5765 0.7562 26 1 4.7011 -1.4585 6.0219 27 1 3.0832 0.9759 1.9721 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211509.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:13 Heat of formation + Delta-G solvation = 126.921753 kcal Electronic energy + Delta-G solvation = -14028.013820 eV Core-core repulsion = 11595.372586 eV Total energy + Delta-G solvation = -2432.641234 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.50581 -38.66713 -34.89752 -33.97945 -31.79391 -30.37966 -28.65978 -25.39957 -24.61805 -23.79557 -21.84145 -20.61894 -18.10837 -17.44296 -16.35522 -16.05297 -15.63740 -14.75104 -14.29837 -13.57407 -12.95456 -12.84833 -12.48983 -12.41240 -11.79910 -11.57615 -11.10304 -11.01421 -10.65274 -10.46436 -10.20583 -9.92212 -9.58549 -9.34832 -9.03337 -8.60394 -8.19612 -6.25520 -4.35596 0.84336 1.18765 2.27415 2.90062 3.19660 3.25339 3.28308 3.69178 3.82980 4.24658 4.37872 4.84548 4.99461 5.08563 5.38197 5.69695 5.86499 6.26582 6.41431 6.53628 6.57357 6.60517 6.84341 6.87798 7.35854 7.58015 7.78139 7.82215 8.03768 8.21714 8.65804 9.32120 10.79783 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.050232 B = 0.007487 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.280136 B = 3738.731736 C = 3842.155692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.089 3.911 3 H 0.046 0.954 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.276 1.276 12 C -0.120 4.120 13 C 0.225 3.775 14 N -0.469 5.469 15 C 0.429 3.571 16 N -0.543 5.543 17 C 0.237 3.763 18 N -0.353 5.353 19 N -0.315 5.315 20 C 0.130 3.870 21 H 0.012 0.988 22 H 0.034 0.966 23 H 0.093 0.907 24 H 0.266 0.734 25 H 0.192 0.808 26 H 0.225 0.775 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -1.039 6.398 6.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.069 3.931 3 H 0.064 0.936 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.202 1.202 12 C -0.127 4.127 13 C 0.042 3.958 14 N -0.184 5.184 15 C 0.069 3.931 16 N -0.277 5.277 17 C -0.064 4.064 18 N -0.187 5.187 19 N -0.092 5.092 20 C -0.006 4.006 21 H 0.032 0.968 22 H 0.053 0.947 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.209 0.791 26 H 0.241 0.759 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.494 -1.483 7.049 7.356 hybrid contribution 0.520 0.428 -1.170 1.350 sum 2.014 -1.055 5.878 6.302 Atomic orbital electron populations 1.21855 0.96595 0.99943 1.01083 1.17825 0.93360 0.95597 0.86324 0.93636 1.20950 1.32535 1.13139 0.89516 0.92221 1.24908 0.94570 0.94811 0.99056 1.69841 1.35720 1.22400 1.24163 0.86571 0.79313 0.79869 0.81849 1.19914 1.21126 1.20177 1.21557 0.97047 0.95746 0.98327 1.23723 0.90500 0.91544 0.90077 1.68086 1.12107 1.34945 1.03279 1.22813 0.95614 0.80404 0.94266 1.70760 1.19510 1.29741 1.07702 1.26075 0.95576 0.85477 0.99315 1.78409 1.18656 1.23504 0.98094 1.48649 1.32219 1.12177 1.16178 1.22133 0.95464 0.99730 0.83322 0.96845 0.94721 0.88816 0.92442 0.79115 0.75886 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.79 37.16 0.33 -2.42 15 2 C 0.09 1.85 2.48 -92.92 -0.23 1.62 15 3 H 0.05 1.00 7.88 -51.93 -0.41 0.59 15 4 C -0.52 -12.27 8.26 -34.44 -0.28 -12.56 15 5 H 0.06 1.39 7.62 -52.49 -0.40 0.99 15 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 15 7 N -0.88 -22.34 11.32 55.43 0.63 -21.71 15 8 Si 0.90 19.30 29.54 -169.99 -5.02 14.28 15 9 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 10 H -0.29 -6.18 7.11 56.52 0.40 -5.78 15 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 12 C -0.12 -2.20 4.70 -104.83 -0.49 -2.69 15 13 C 0.23 3.99 10.02 -17.08 -0.17 3.82 15 14 N -0.47 -9.03 10.48 -13.82 -0.14 -9.17 15 15 C 0.43 8.49 8.99 -323.14 -2.91 5.58 15 16 N -0.54 -10.26 11.25 -15.66 -0.18 -10.43 15 17 C 0.24 3.72 12.98 -91.98 -1.19 2.52 15 18 N -0.35 -6.22 12.78 29.25 0.37 -5.85 15 19 N -0.31 -5.91 3.91 -13.84 -0.05 -5.96 15 20 C 0.13 2.28 10.94 -16.59 -0.18 2.10 15 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 22 H 0.03 0.64 7.42 -51.93 -0.39 0.26 15 23 H 0.09 2.12 6.07 -51.93 -0.32 1.81 15 24 H 0.27 6.49 8.31 -40.82 -0.34 6.15 15 25 H 0.19 2.99 7.62 -52.48 -0.40 2.59 15 26 H 0.23 2.26 8.06 -52.48 -0.42 1.83 15 27 H 0.18 2.70 7.95 -52.49 -0.42 2.28 15 LS Contribution 242.14 15.07 3.65 3.65 Total: -1.00 -27.84 242.14 -8.28 -36.12 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -2.31 Total: -0.51 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -5.23 Total: -0.43 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.63 Total: -53.12 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.84 -8.28 -36.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211509.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.046 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds