Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47328 * 2 1 4 4 C 1.50700 * 109.47314 * 119.99534 * 2 1 3 5 5 H 1.08006 * 119.99938 * 119.99995 * 4 2 1 6 6 C 1.37879 * 120.00019 * 300.00710 * 4 2 1 7 7 N 1.31514 * 119.99845 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99986 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47231 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47187 * 119.99465 * 8 6 4 11 11 H 1.48494 * 109.47129 * 239.99543 * 8 6 4 12 12 C 1.50700 * 109.47567 * 239.99668 * 2 1 3 13 13 C 1.40044 * 120.37729 * 300.00143 * 12 2 1 14 14 N 1.31350 * 120.30615 * 180.02562 * 13 12 2 15 15 C 1.33815 * 120.86843 * 0.02562 * 14 13 12 16 16 N 1.32829 * 132.49994 * 179.97438 * 15 14 13 17 17 C 1.32609 * 109.75685 * 180.02562 * 16 15 14 18 18 N 1.31184 * 109.62854 * 0.02562 * 17 16 15 19 19 N 1.36659 * 120.28750 * 359.97438 * 15 14 13 20 20 C 1.35777 * 120.38150 * 120.01824 * 12 2 1 21 21 H 1.08999 * 109.47004 * 60.00228 * 1 2 3 22 22 H 1.09003 * 109.46874 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47402 * 300.00208 * 1 2 3 24 24 H 0.97003 * 119.99586 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.84910 * 0.04496 * 13 12 2 26 26 H 1.07994 * 125.18891 * 179.97438 * 17 16 15 27 27 H 1.08004 * 120.49044 * 359.96147 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 0.9433 0.8303 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.1456 -2.2874 3.6039 10 1 3.1465 -0.1871 4.8165 11 1 1.1661 -1.5864 4.8161 12 6 2.0324 -0.7105 -1.2304 13 6 1.6990 -2.0511 -1.4598 14 7 2.1381 -2.6692 -2.5324 15 6 2.9092 -2.0346 -3.4231 16 7 3.4708 -2.4236 -4.5623 17 6 4.1528 -1.4174 -5.0924 18 7 4.0530 -0.3619 -4.3197 19 7 3.2528 -0.7262 -3.2289 20 6 2.8138 -0.0582 -2.1290 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7093 1.1619 3.4844 25 1 1.0776 -2.5793 -0.7517 26 1 4.7066 -1.4605 -6.0185 27 1 3.0830 0.9759 -1.9723 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211511.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = 113.678689 kcal Electronic energy + Delta-G solvation = -14029.029121 eV Core-core repulsion = 11595.813625 eV Total energy + Delta-G solvation = -2433.215496 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.88654 -40.07836 -36.51876 -35.42264 -33.49157 -31.75350 -30.18913 -27.18419 -26.00442 -25.26887 -23.19137 -22.21862 -19.56796 -18.87224 -18.01805 -17.52780 -17.12058 -16.39513 -15.52644 -15.08774 -14.62318 -14.32036 -13.94948 -13.84119 -13.39056 -13.13406 -12.83587 -12.66275 -12.26615 -12.13608 -11.89306 -11.31861 -11.16104 -10.88939 -10.49634 -10.43217 -9.64651 -8.10106 -6.23515 -0.54084 -0.22860 0.89909 1.45677 1.51643 1.58425 1.61442 2.35623 2.38792 2.49304 3.04720 3.21228 3.49304 3.80967 4.00424 4.24043 4.44957 4.91678 4.96548 5.04678 5.08803 5.23463 5.31647 5.34951 5.61740 5.83817 6.06891 6.28418 6.40574 6.83808 6.85926 7.46205 8.94271 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.050212 B = 0.007489 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.504499 B = 3737.826692 C = 3841.609507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.093 3.907 3 H 0.030 0.970 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.028 3.972 7 N -0.908 5.908 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.281 1.281 12 C -0.127 4.127 13 C 0.231 3.769 14 N -0.484 5.484 15 C 0.410 3.590 16 N -0.565 5.565 17 C 0.250 3.750 18 N -0.367 5.367 19 N -0.323 5.323 20 C 0.138 3.862 21 H 0.029 0.971 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.263 0.737 25 H 0.208 0.792 26 H 0.275 0.725 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -1.424 -7.237 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.073 3.927 3 H 0.048 0.952 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.172 4.172 7 N -0.547 5.547 8 Si 0.774 3.226 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.207 1.207 12 C -0.134 4.134 13 C 0.048 3.952 14 N -0.200 5.200 15 C 0.051 3.949 16 N -0.299 5.299 17 C -0.051 4.051 18 N -0.199 5.199 19 N -0.101 5.101 20 C 0.002 3.998 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.225 0.775 26 H 0.290 0.710 27 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.095 -1.874 -7.901 8.386 hybrid contribution 0.376 0.574 1.342 1.507 sum 2.471 -1.300 -6.559 7.129 Atomic orbital electron populations 1.21720 0.96053 1.00475 1.00548 1.17633 0.93798 0.94666 0.86570 0.95169 1.21306 1.31707 1.12846 0.90545 0.92422 1.25501 0.95001 0.95441 1.01291 1.69969 1.36970 1.23564 1.24203 0.85673 0.78147 0.78708 0.80111 1.19454 1.21325 1.20660 1.21237 0.98206 0.96012 0.97960 1.23927 0.90060 0.91339 0.89848 1.68124 1.12809 1.35352 1.03700 1.23109 0.95998 0.81030 0.94806 1.70798 1.20314 1.30986 1.07843 1.27102 0.94155 0.83860 0.99973 1.78409 1.18892 1.24474 0.98172 1.48763 1.32593 1.12026 1.16714 1.22376 0.94242 1.00407 0.82743 0.95153 0.93648 0.91472 0.92740 0.77503 0.70965 0.78687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.79 71.98 0.63 -4.47 15 2 C 0.09 3.81 2.48 -12.29 -0.03 3.78 15 3 H 0.03 1.32 7.88 -2.39 -0.02 1.31 15 4 C -0.53 -24.30 8.26 25.60 0.21 -24.09 15 5 H 0.06 2.65 7.62 -2.91 -0.02 2.63 15 6 C 0.03 1.35 5.30 84.66 0.45 1.80 15 7 N -0.91 -45.97 11.32 21.45 0.24 -45.72 15 8 Si 0.95 39.26 29.54 68.60 2.03 41.29 15 9 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 10 H -0.29 -12.01 7.11 99.48 0.71 -11.31 15 11 H -0.28 -11.53 7.11 99.48 0.71 -10.82 15 12 C -0.13 -4.52 4.70 -20.00 -0.09 -4.61 15 13 C 0.23 7.90 10.01 85.20 0.85 8.76 15 14 N -0.48 -18.08 10.48 -197.64 -2.07 -20.15 15 15 C 0.41 15.68 8.99 261.60 2.35 18.04 15 16 N -0.56 -20.25 11.25 -203.47 -2.29 -22.54 15 17 C 0.25 7.12 12.98 180.82 2.35 9.47 15 18 N -0.37 -12.09 12.78 -61.36 -0.78 -12.87 15 19 N -0.32 -11.61 3.91 -197.71 -0.77 -12.39 15 20 C 0.14 4.67 10.94 83.48 0.91 5.58 15 21 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 22 H 0.04 1.63 7.44 -2.39 -0.02 1.62 15 23 H 0.07 3.03 6.07 -2.39 -0.01 3.02 15 24 H 0.26 12.84 8.31 -92.71 -0.77 12.07 15 25 H 0.21 6.19 7.63 -2.91 -0.02 6.17 15 26 H 0.28 4.37 8.06 -2.91 -0.02 4.34 15 27 H 0.20 5.66 7.95 -2.91 -0.02 5.64 15 Total: -1.00 -57.95 242.15 5.18 -52.78 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.19 Total: 5.37 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.63 Total: 14.24 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -5.67 Total: -113.67 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -57.95 5.18 -52.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211511.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.456 kcal (2) G-P(sol) polarization free energy of solvation -57.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds