Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47445 * 88.19500 * 3 2 1 5 5 H 1.48494 * 109.47403 * 208.19832 * 3 2 1 6 6 H 1.48508 * 109.46841 * 328.19899 * 3 2 1 7 7 C 1.37874 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99492 * 358.44469 * 7 2 1 9 9 C 1.50697 * 120.00343 * 178.44694 * 7 2 1 10 10 H 1.09000 * 109.25178 * 24.81637 * 9 7 2 11 11 C 1.52738 * 109.25087 * 265.34947 * 9 7 2 12 12 C 1.53327 * 108.36288 * 188.63660 * 11 9 7 13 13 C 1.52724 * 108.37579 * 69.94680 * 12 11 9 14 14 C 1.50661 * 110.59549 * 308.90732 * 13 12 11 15 15 C 1.38956 * 117.69516 * 197.48803 * 14 13 12 16 16 C 1.37828 * 120.63092 * 180.19351 * 15 14 13 17 17 C 1.38770 * 119.70873 * 0.04997 * 16 15 14 18 18 O 1.35900 * 120.17194 * 179.91463 * 17 16 15 19 19 C 1.38418 * 119.65210 * 359.89027 * 17 16 15 20 20 C 1.37657 * 122.52446 * 17.59088 * 14 13 12 21 21 H 0.97001 * 119.99665 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.68503 * 308.35176 * 11 9 7 23 23 H 1.08991 * 109.68170 * 68.87572 * 11 9 7 24 24 H 1.09009 * 109.68092 * 189.66908 * 12 11 9 25 25 H 1.09004 * 109.68411 * 310.18721 * 12 11 9 26 26 H 1.08997 * 109.25478 * 69.19585 * 13 12 11 27 27 H 1.09006 * 109.25142 * 188.62433 * 13 12 11 28 28 H 1.08000 * 119.68029 * 0.22186 * 15 14 13 29 29 H 1.08000 * 120.14670 * 180.02562 * 16 15 14 30 30 H 0.96702 * 114.00039 * 89.99104 * 18 17 16 31 31 H 1.07997 * 119.74703 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4585 2.0685 1.3993 5 1 3.5652 1.4295 -0.6615 6 1 1.4661 2.6414 -0.7378 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1292 0.0244 9 6 3.5111 -1.1943 -0.0359 10 1 3.8804 -0.2547 0.3752 11 6 3.9808 -1.3301 -1.4829 12 6 5.4988 -1.5462 -1.4797 13 6 5.7859 -2.9371 -0.9182 14 6 5.0746 -3.1357 0.3950 15 6 5.5079 -4.1712 1.2141 16 6 4.8978 -4.4096 2.4268 17 6 3.8399 -3.6090 2.8336 18 8 3.2303 -3.8368 4.0267 19 6 3.4092 -2.5768 2.0181 20 6 4.0273 -2.3381 0.7975 21 1 -0.4850 0.8401 0.0004 22 1 3.4894 -2.1837 -1.9499 23 1 3.7398 -0.4211 -2.0339 24 1 5.8819 -1.4749 -2.4978 25 1 5.9758 -0.7915 -0.8543 26 1 5.4444 -3.6893 -1.6292 27 1 6.8595 -3.0486 -0.7658 28 1 6.3310 -4.7947 0.8976 29 1 5.2413 -5.2163 3.0574 30 1 3.6218 -3.3533 4.7670 31 1 2.5863 -1.9525 2.3334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260266614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -39.535263 kcal Electronic energy + Delta-G solvation = -14606.000061 eV Core-core repulsion = 12237.388301 eV Total energy + Delta-G solvation = -2368.611759 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60472 -37.30636 -34.63095 -33.06177 -31.33798 -29.07924 -28.13747 -24.92974 -22.50204 -21.93226 -20.85420 -18.98236 -17.38022 -16.85240 -15.56009 -15.13752 -14.67844 -14.27438 -13.84184 -13.40615 -12.92768 -12.63995 -12.52333 -12.06155 -11.80695 -11.49471 -11.05802 -11.04868 -10.73377 -10.34701 -10.22545 -9.89392 -9.81230 -9.30415 -9.16640 -8.61383 -8.02471 -7.72189 -6.11160 -4.10887 1.84200 2.02102 3.24085 3.33913 3.34711 4.22556 4.37160 4.72641 5.15665 5.23680 5.41352 5.56288 5.61335 5.68288 5.94368 5.99433 6.19053 6.25453 6.35470 6.46002 6.49509 6.53914 6.70786 6.86398 6.91166 7.01885 7.21978 7.25355 7.40724 7.58226 7.76448 8.15115 8.48834 8.95134 9.49806 11.01754 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.012241 C = 0.009134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.978781 B = 2286.853735 C = 3064.645139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.871 3.129 4 H -0.277 1.277 5 H -0.261 1.261 6 H -0.287 1.287 7 C -0.507 4.507 8 H 0.076 0.924 9 C 0.042 3.958 10 H 0.047 0.953 11 C -0.110 4.110 12 C -0.125 4.125 13 C -0.071 4.071 14 C -0.102 4.102 15 C -0.117 4.117 16 C -0.165 4.165 17 C 0.083 3.917 18 O -0.502 6.502 19 C -0.119 4.119 20 C -0.019 4.019 21 H 0.264 0.736 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.380 0.620 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.787 -3.782 2.147 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.185 1.185 6 H -0.214 1.214 7 C -0.545 4.545 8 H 0.094 0.906 9 C 0.024 3.976 10 H 0.065 0.935 11 C -0.148 4.148 12 C -0.163 4.163 13 C -0.108 4.108 14 C -0.102 4.102 15 C -0.135 4.135 16 C -0.183 4.183 17 C 0.039 3.961 18 O -0.311 6.311 19 C -0.137 4.137 20 C -0.019 4.019 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.234 0.766 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.240 -4.034 1.809 12.078 hybrid contribution 0.548 1.111 0.388 1.298 sum 11.787 -2.924 2.196 12.342 Atomic orbital electron populations 1.69897 1.06256 1.26951 1.50347 1.25054 0.94695 0.98784 0.94418 0.86939 0.80610 0.83996 0.78644 1.20277 1.18504 1.21364 1.20923 0.87934 0.94661 1.50950 0.90635 1.18269 0.96846 0.91861 0.90665 0.93542 1.21815 0.92253 1.01288 0.99417 1.21669 0.98868 0.96121 0.99606 1.20362 0.98405 0.98070 0.93935 1.19708 0.97363 0.96534 0.96629 1.20849 1.00228 0.98021 0.94378 1.21091 0.97398 1.01471 0.98357 1.18482 0.93794 0.96146 0.87642 1.84835 1.58815 1.71089 1.16326 1.21716 1.00186 0.96984 0.94825 1.20109 0.91709 0.96308 0.93823 0.92582 0.92161 0.92649 0.92696 0.92495 0.91315 0.91985 0.86837 0.86649 0.76571 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 20.83 26.85 -169.99 -4.56 16.27 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.26 -5.88 6.31 56.52 0.36 -5.52 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.51 -13.84 7.43 -34.44 -0.26 -14.09 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.04 0.97 1.75 -93.09 -0.16 0.81 16 10 H 0.05 1.09 5.27 -51.93 -0.27 0.82 16 11 C -0.11 -2.25 5.21 -26.70 -0.14 -2.39 16 12 C -0.13 -2.08 5.98 -26.70 -0.16 -2.24 16 13 C -0.07 -1.11 5.67 -28.04 -0.16 -1.26 16 14 C -0.10 -1.87 5.74 -104.59 -0.60 -2.47 16 15 C -0.12 -1.90 9.60 -39.47 -0.38 -2.28 16 16 C -0.16 -2.74 9.99 -39.53 -0.40 -3.13 16 17 C 0.08 1.55 6.70 -39.32 -0.26 1.29 16 18 O -0.50 -8.41 13.51 -19.43 -0.26 -8.67 16 19 C -0.12 -2.53 8.98 -39.27 -0.35 -2.88 16 20 C -0.02 -0.41 5.42 -104.62 -0.57 -0.97 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.06 1.26 8.08 -51.93 -0.42 0.85 16 23 H 0.05 1.15 7.57 -51.93 -0.39 0.76 16 24 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.11 1.51 8.05 -52.49 -0.42 1.09 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.38 4.30 9.06 45.56 0.41 4.71 16 31 H 0.14 3.18 7.27 -52.49 -0.38 2.80 16 LS Contribution 255.01 15.07 3.84 3.84 Total: -1.00 -30.56 255.01 -6.93 -37.49 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.19 Total: 4.94 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.53 Total: -27.70 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.17 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.26 Total: -8.67 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.56 Total: 16.27 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.56 -6.93 -37.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260266614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.048 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds