Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47445 * 88.19500 * 3 2 1 5 5 H 1.48494 * 109.47403 * 208.19832 * 3 2 1 6 6 H 1.48508 * 109.46841 * 328.19899 * 3 2 1 7 7 C 1.37874 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99492 * 358.44469 * 7 2 1 9 9 C 1.50697 * 120.00343 * 178.44694 * 7 2 1 10 10 H 1.09000 * 109.25178 * 24.81637 * 9 7 2 11 11 C 1.52738 * 109.25087 * 265.34947 * 9 7 2 12 12 C 1.53327 * 108.36288 * 188.63660 * 11 9 7 13 13 C 1.52724 * 108.37579 * 69.94680 * 12 11 9 14 14 C 1.50661 * 110.59549 * 308.90732 * 13 12 11 15 15 C 1.38956 * 117.69516 * 197.48803 * 14 13 12 16 16 C 1.37828 * 120.63092 * 180.19351 * 15 14 13 17 17 C 1.38770 * 119.70873 * 0.04997 * 16 15 14 18 18 O 1.35900 * 120.17194 * 179.91463 * 17 16 15 19 19 C 1.38418 * 119.65210 * 359.89027 * 17 16 15 20 20 C 1.37657 * 122.52446 * 17.59088 * 14 13 12 21 21 H 0.97001 * 119.99665 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.68503 * 308.35176 * 11 9 7 23 23 H 1.08991 * 109.68170 * 68.87572 * 11 9 7 24 24 H 1.09009 * 109.68092 * 189.66908 * 12 11 9 25 25 H 1.09004 * 109.68411 * 310.18721 * 12 11 9 26 26 H 1.08997 * 109.25478 * 69.19585 * 13 12 11 27 27 H 1.09006 * 109.25142 * 188.62433 * 13 12 11 28 28 H 1.08000 * 119.68029 * 0.22186 * 15 14 13 29 29 H 1.08000 * 120.14670 * 180.02562 * 16 15 14 30 30 H 0.96702 * 114.00039 * 89.99104 * 18 17 16 31 31 H 1.07997 * 119.74703 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4585 2.0685 1.3993 5 1 3.5652 1.4295 -0.6615 6 1 1.4661 2.6414 -0.7378 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1292 0.0244 9 6 3.5111 -1.1943 -0.0359 10 1 3.8804 -0.2547 0.3752 11 6 3.9808 -1.3301 -1.4829 12 6 5.4988 -1.5462 -1.4797 13 6 5.7859 -2.9371 -0.9182 14 6 5.0746 -3.1357 0.3950 15 6 5.5079 -4.1712 1.2141 16 6 4.8978 -4.4096 2.4268 17 6 3.8399 -3.6090 2.8336 18 8 3.2303 -3.8368 4.0267 19 6 3.4092 -2.5768 2.0181 20 6 4.0273 -2.3381 0.7975 21 1 -0.4850 0.8401 0.0004 22 1 3.4894 -2.1837 -1.9499 23 1 3.7398 -0.4211 -2.0339 24 1 5.8819 -1.4749 -2.4978 25 1 5.9758 -0.7915 -0.8543 26 1 5.4444 -3.6893 -1.6292 27 1 6.8595 -3.0486 -0.7658 28 1 6.3310 -4.7947 0.8976 29 1 5.2413 -5.2163 3.0574 30 1 3.6218 -3.3533 4.7670 31 1 2.5863 -1.9525 2.3334 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260266614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -60.204882 kcal Electronic energy + Delta-G solvation = -14606.896363 eV Core-core repulsion = 12237.388301 eV Total energy + Delta-G solvation = -2369.508061 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04469 -38.71874 -36.14877 -34.84292 -33.11393 -30.53163 -29.68971 -26.74673 -24.01666 -23.35678 -22.46361 -20.41532 -19.15887 -18.63255 -17.06571 -16.53202 -16.25972 -15.98003 -15.29256 -14.95311 -14.53451 -14.31950 -14.07323 -13.51595 -13.32702 -12.94882 -12.87021 -12.60384 -12.36406 -11.92066 -11.79892 -11.57804 -11.45767 -11.04235 -10.85434 -10.69603 -9.52566 -9.14480 -8.29939 -6.33282 0.43804 0.58023 1.32253 1.33526 1.45400 2.32724 2.82552 3.05440 3.40544 3.95919 4.01185 4.23900 4.26402 4.41476 4.51715 4.59118 4.73916 4.81055 4.94791 5.07803 5.11828 5.16326 5.23374 5.34436 5.43227 5.53270 5.59158 5.66168 5.78390 5.99697 6.13207 6.33211 6.73037 6.93397 7.30188 8.87440 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.012241 C = 0.009134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.978781 B = 2286.853735 C = 3064.645139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.235 1.235 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.022 0.978 9 C 0.042 3.958 10 H 0.042 0.958 11 C -0.110 4.110 12 C -0.118 4.118 13 C -0.070 4.070 14 C -0.106 4.106 15 C -0.104 4.104 16 C -0.156 4.156 17 C 0.081 3.919 18 O -0.513 6.513 19 C -0.154 4.154 20 C -0.051 4.051 21 H 0.265 0.735 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.404 0.596 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.771 -4.598 1.851 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.186 4.186 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.158 1.158 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.040 0.960 9 C 0.024 3.976 10 H 0.060 0.940 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.106 4.106 14 C -0.106 4.106 15 C -0.122 4.122 16 C -0.174 4.174 17 C 0.037 3.963 18 O -0.325 6.325 19 C -0.172 4.172 20 C -0.051 4.051 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.176 0.824 29 H 0.168 0.832 30 H 0.261 0.739 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.253 -4.857 1.525 16.080 hybrid contribution -0.739 1.209 0.570 1.527 sum 14.514 -3.649 2.095 15.112 Atomic orbital electron populations 1.70065 1.08330 1.27982 1.52839 1.25954 0.95461 1.02945 0.94276 0.85855 0.80184 0.78705 0.79050 1.19722 1.15769 1.21150 1.21095 0.90754 0.92505 1.49635 0.95992 1.18197 0.93524 0.92947 0.92978 0.94032 1.21701 0.95846 1.00371 0.96896 1.21624 0.95001 0.97155 1.01764 1.20469 1.00351 0.97464 0.92357 1.20057 0.96287 0.96109 0.98192 1.21321 1.00508 0.97077 0.93308 1.21465 0.95885 1.01183 0.98909 1.18569 0.94293 0.95587 0.87888 1.84762 1.59626 1.71453 1.16668 1.21571 1.00498 0.98680 0.96493 1.20014 0.93929 0.97260 0.93893 0.92582 0.93583 0.93432 0.89600 0.92139 0.90228 0.88072 0.82354 0.83247 0.73855 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.01 0.59 5.47 84.65 0.46 1.06 16 3 Si 0.94 44.15 26.85 68.60 1.84 45.99 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.23 -9.96 6.31 99.48 0.63 -9.33 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.50 -29.17 7.43 25.60 0.19 -28.98 16 8 H 0.02 1.46 8.06 -2.91 -0.02 1.43 16 9 C 0.04 1.98 1.75 -12.39 -0.02 1.96 16 10 H 0.04 1.96 5.27 -2.39 -0.01 1.95 16 11 C -0.11 -4.44 5.21 30.62 0.16 -4.28 16 12 C -0.12 -3.49 5.98 30.61 0.18 -3.31 16 13 C -0.07 -1.85 5.67 29.74 0.17 -1.68 16 14 C -0.11 -3.59 5.74 -19.84 -0.11 -3.70 16 15 C -0.10 -2.92 9.60 22.34 0.21 -2.71 16 16 C -0.16 -4.63 9.99 22.30 0.22 -4.41 16 17 C 0.08 2.95 6.70 22.44 0.15 3.10 16 18 O -0.51 -16.90 13.51 -92.43 -1.25 -18.15 16 19 C -0.15 -6.81 8.98 22.47 0.20 -6.61 16 20 C -0.05 -2.17 5.42 -19.86 -0.11 -2.28 16 21 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 22 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 23 H 0.05 1.94 7.57 -2.39 -0.02 1.92 16 24 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 25 H 0.06 1.76 8.10 -2.38 -0.02 1.74 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.10 1.98 8.13 -2.38 -0.02 1.96 16 28 H 0.16 3.07 8.05 -2.91 -0.02 3.05 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.40 8.74 9.06 -74.06 -0.67 8.07 16 31 H 0.10 4.94 7.27 -2.91 -0.02 4.92 16 Total: -1.00 -71.53 255.01 2.98 -68.55 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.38 Total: 15.77 kcal Atomic # 6 Polarization: -53.55 SS G_CDS: 1.71 Total: -51.84 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.30 Total: -60.32 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.25 Total: -18.15 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.84 Total: 45.99 kcal Total: -71.53 2.98 -68.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260266614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.346 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds