Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.81141 * 2 1 4 4 C 1.50690 * 109.47392 * 303.13188 * 3 2 1 5 5 H 1.08010 * 119.99659 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00671 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00575 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99584 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47041 * 90.00388 * 8 6 4 10 10 H 1.48495 * 109.47186 * 210.00400 * 8 6 4 11 11 H 1.48504 * 109.47003 * 330.00605 * 8 6 4 12 12 C 1.54707 * 110.74969 * 123.32072 * 2 1 3 13 13 C 1.51646 * 101.94352 * 93.09579 * 12 2 1 14 14 C 1.37739 * 132.17082 * 195.60854 * 13 12 2 15 15 C 1.38355 * 119.97853 * 179.09484 * 14 13 12 16 16 C 1.38283 * 119.76507 * 0.02562 * 15 14 13 17 17 C 1.37935 * 120.35289 * 0.18755 * 16 15 14 18 18 C 1.38880 * 107.04327 * 15.13743 * 13 12 2 19 19 O 1.36136 * 111.22218 * 1.43919 * 18 13 12 20 20 H 1.08999 * 109.47205 * 181.86617 * 1 2 3 21 21 H 1.09005 * 109.47452 * 301.86877 * 1 2 3 22 22 H 1.09006 * 109.47229 * 61.87043 * 1 2 3 23 23 H 1.09008 * 109.46924 * 63.13046 * 3 2 1 24 24 H 1.09001 * 109.47118 * 183.12469 * 3 2 1 25 25 H 0.96997 * 120.00012 * 180.02562 * 7 6 4 26 26 H 1.09000 * 110.93915 * 334.93457 * 12 2 1 27 27 H 1.09001 * 110.93638 * 211.25954 * 12 2 1 28 28 H 1.08001 * 120.01558 * 359.07476 * 14 13 12 29 29 H 1.08001 * 120.11472 * 179.73249 * 15 14 13 30 30 H 1.08002 * 119.82575 * 180.18824 * 16 15 14 31 31 H 1.07994 * 119.88119 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0736 1.4302 0.0000 4 6 1.5262 2.1757 -1.1897 5 1 0.8577 1.6789 -1.8774 6 6 1.8795 3.4915 -1.4011 7 7 1.4014 4.1423 -2.4391 8 14 3.0362 4.3505 -0.2121 9 1 4.4386 4.1611 -0.6620 10 1 2.7199 5.8009 -0.1746 11 1 2.8694 3.7722 1.1456 12 6 2.0781 -0.7947 1.2089 13 6 2.2642 -2.1783 0.6166 14 6 2.4517 -3.4142 1.1950 15 6 2.5777 -4.5383 0.3984 16 6 2.5152 -4.4152 -0.9776 17 6 2.3319 -3.1779 -1.5590 18 6 2.2070 -2.0410 -0.7642 19 8 2.0394 -0.7386 -1.1234 20 1 -0.3633 -1.0271 0.0335 21 1 -0.3634 0.5426 0.8728 22 1 -0.3634 0.4845 -0.9063 23 1 1.7685 1.9349 0.9168 24 1 3.1618 1.4052 -0.0560 25 1 1.6502 5.0679 -2.5879 26 1 1.3537 -0.8139 2.0232 27 1 3.0299 -0.3840 1.5458 28 1 2.5007 -3.5058 2.2700 29 1 2.7291 -5.5079 0.8494 30 1 2.6104 -5.2925 -1.6003 31 1 2.2846 -3.0905 -2.6344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = -13.865715 kcal Electronic energy + Delta-G solvation = -14455.507496 eV Core-core repulsion = 12088.008852 eV Total energy + Delta-G solvation = -2367.498644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.79935 -37.28777 -33.78914 -32.35098 -31.00768 -29.69778 -27.73063 -26.43309 -22.97994 -22.01238 -21.28304 -19.62158 -16.95625 -16.62834 -15.80404 -15.31342 -14.96251 -14.01884 -13.88397 -13.29109 -13.13280 -12.84378 -12.55186 -12.10850 -11.97122 -11.69574 -11.44716 -11.37962 -11.05264 -10.69577 -10.43044 -10.39976 -9.88359 -9.62129 -9.13508 -8.66074 -8.55547 -7.71901 -6.04308 -4.02210 1.52992 1.66081 3.29387 3.36769 3.37374 3.79983 4.02167 4.42960 4.82786 4.98584 5.16916 5.23577 5.28693 5.50748 5.54554 5.60022 5.81796 5.85973 6.04022 6.11402 6.28570 6.31677 6.55125 6.61487 6.66653 6.75669 6.85471 6.90765 7.05046 7.19593 7.67179 7.84876 8.51751 9.01641 9.55977 11.08812 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.049873 B = 0.007682 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.286303 B = 3643.918387 C = 3799.493802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.123 3.877 3 C -0.004 4.004 4 C -0.512 4.512 5 H 0.079 0.921 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.266 1.266 12 C -0.108 4.108 13 C -0.178 4.178 14 C -0.074 4.074 15 C -0.166 4.166 16 C -0.089 4.089 17 C -0.151 4.151 18 C 0.121 3.879 19 O -0.277 6.277 20 H 0.041 0.959 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -13.830 7.352 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.086 3.914 3 C -0.041 4.041 4 C -0.550 4.550 5 H 0.097 0.903 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.191 1.191 12 C -0.145 4.145 13 C -0.179 4.179 14 C -0.092 4.092 15 C -0.184 4.184 16 C -0.107 4.107 17 C -0.170 4.170 18 C 0.074 3.926 19 O -0.190 6.190 20 H 0.060 0.940 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.378 -13.503 7.052 15.296 hybrid contribution 0.657 0.550 0.648 1.075 sum 2.035 -12.953 7.700 15.206 Atomic orbital electron populations 1.22073 0.93913 1.00443 1.04232 1.22842 0.94165 0.93618 0.80740 1.19730 0.96652 0.88741 0.98986 1.21006 1.29170 0.96098 1.08688 0.90262 1.24989 0.95847 0.97347 0.95172 1.69899 1.44849 1.10929 1.28268 0.86854 0.81768 0.78901 0.82215 1.20256 1.21277 1.19095 1.22019 1.02352 0.90880 0.99209 1.20960 1.06809 0.95601 0.94531 1.20255 0.98678 0.90805 0.99453 1.20884 1.05787 0.98053 0.93699 1.20771 0.98795 0.96205 0.94908 1.20279 1.07223 0.89708 0.99815 1.19874 0.93591 0.86435 0.92706 1.87110 1.78666 1.14471 1.38739 0.93988 0.91394 0.89946 0.94445 0.95929 0.92706 0.89688 0.89536 0.86408 0.86159 0.85791 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.51 37.16 0.32 -2.54 16 2 C 0.12 2.55 0.86 -89.72 -0.08 2.47 16 3 C 0.00 -0.09 3.36 -27.89 -0.09 -0.19 16 4 C -0.51 -14.45 8.85 -34.45 -0.30 -14.76 16 5 H 0.08 2.43 6.80 -52.48 -0.36 2.07 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 8 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 12 C -0.11 -1.83 6.18 -26.52 -0.16 -1.99 16 13 C -0.18 -2.99 6.27 -104.10 -0.65 -3.65 16 14 C -0.07 -1.02 10.03 -39.72 -0.40 -1.42 16 15 C -0.17 -2.08 10.07 -39.52 -0.40 -2.48 16 16 C -0.09 -1.16 10.02 -39.68 -0.40 -1.55 16 17 C -0.15 -2.41 10.06 -39.30 -0.40 -2.81 16 18 C 0.12 2.27 6.94 -38.96 -0.27 2.00 16 19 O -0.28 -6.16 10.36 -20.17 -0.21 -6.37 16 20 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.08 1.76 6.62 -51.93 -0.34 1.41 16 23 H 0.04 0.85 7.20 -51.92 -0.37 0.48 16 24 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 27 H 0.09 1.43 7.92 -51.93 -0.41 1.01 16 28 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 259.98 15.07 3.92 3.92 Total: -1.00 -31.11 259.98 -7.11 -38.22 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.99 Total: -0.59 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.93 Total: -25.05 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.21 Total: -6.37 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.11 -7.11 -38.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.358 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds