Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.81141 * 2 1 4 4 C 1.50690 * 109.47392 * 303.13188 * 3 2 1 5 5 H 1.08010 * 119.99659 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00671 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00575 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99584 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47041 * 90.00388 * 8 6 4 10 10 H 1.48495 * 109.47186 * 210.00400 * 8 6 4 11 11 H 1.48504 * 109.47003 * 330.00605 * 8 6 4 12 12 C 1.54707 * 110.74969 * 123.32072 * 2 1 3 13 13 C 1.51646 * 101.94352 * 93.09579 * 12 2 1 14 14 C 1.37739 * 132.17082 * 195.60854 * 13 12 2 15 15 C 1.38355 * 119.97853 * 179.09484 * 14 13 12 16 16 C 1.38283 * 119.76507 * 0.02562 * 15 14 13 17 17 C 1.37935 * 120.35289 * 0.18755 * 16 15 14 18 18 C 1.38880 * 107.04327 * 15.13743 * 13 12 2 19 19 O 1.36136 * 111.22218 * 1.43919 * 18 13 12 20 20 H 1.08999 * 109.47205 * 181.86617 * 1 2 3 21 21 H 1.09005 * 109.47452 * 301.86877 * 1 2 3 22 22 H 1.09006 * 109.47229 * 61.87043 * 1 2 3 23 23 H 1.09008 * 109.46924 * 63.13046 * 3 2 1 24 24 H 1.09001 * 109.47118 * 183.12469 * 3 2 1 25 25 H 0.96997 * 120.00012 * 180.02562 * 7 6 4 26 26 H 1.09000 * 110.93915 * 334.93457 * 12 2 1 27 27 H 1.09001 * 110.93638 * 211.25954 * 12 2 1 28 28 H 1.08001 * 120.01558 * 359.07476 * 14 13 12 29 29 H 1.08001 * 120.11472 * 179.73249 * 15 14 13 30 30 H 1.08002 * 119.82575 * 180.18824 * 16 15 14 31 31 H 1.07994 * 119.88119 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0736 1.4302 0.0000 4 6 1.5262 2.1757 -1.1897 5 1 0.8577 1.6789 -1.8774 6 6 1.8795 3.4915 -1.4011 7 7 1.4014 4.1423 -2.4391 8 14 3.0362 4.3505 -0.2121 9 1 4.4386 4.1611 -0.6620 10 1 2.7199 5.8009 -0.1746 11 1 2.8694 3.7722 1.1456 12 6 2.0781 -0.7947 1.2089 13 6 2.2642 -2.1783 0.6166 14 6 2.4517 -3.4142 1.1950 15 6 2.5777 -4.5383 0.3984 16 6 2.5152 -4.4152 -0.9776 17 6 2.3319 -3.1779 -1.5590 18 6 2.2070 -2.0410 -0.7642 19 8 2.0394 -0.7386 -1.1234 20 1 -0.3633 -1.0271 0.0335 21 1 -0.3634 0.5426 0.8728 22 1 -0.3634 0.4845 -0.9063 23 1 1.7685 1.9349 0.9168 24 1 3.1618 1.4052 -0.0560 25 1 1.6502 5.0679 -2.5879 26 1 1.3537 -0.8139 2.0232 27 1 3.0299 -0.3840 1.5458 28 1 2.5007 -3.5058 2.2700 29 1 2.7291 -5.5079 0.8494 30 1 2.6104 -5.2925 -1.6003 31 1 2.2846 -3.0905 -2.6344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312957.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = -33.018960 kcal Electronic energy + Delta-G solvation = -14456.338043 eV Core-core repulsion = 12088.008852 eV Total energy + Delta-G solvation = -2368.329191 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.14868 -38.51998 -35.60265 -34.13000 -32.48833 -30.86730 -29.56061 -27.78631 -24.84286 -23.24238 -22.50358 -21.17931 -18.97715 -17.96919 -17.21447 -16.75824 -16.38172 -15.83710 -15.17364 -14.86824 -14.53030 -14.33305 -13.94842 -13.82344 -13.41014 -13.22751 -12.93205 -12.79837 -12.54020 -12.39633 -12.05144 -11.77177 -11.66273 -11.36221 -11.11445 -10.77385 -9.77226 -8.98212 -8.27256 -6.30840 0.41649 0.50504 1.35283 1.36841 1.47793 2.35598 2.48451 2.85702 3.08367 3.57850 3.66019 4.02684 4.05986 4.24688 4.26584 4.40374 4.56510 4.68118 4.72554 4.80647 4.88298 4.95476 5.10060 5.16568 5.22711 5.40041 5.47930 5.57882 5.60177 5.62358 5.92548 6.27384 6.47419 6.75384 7.30901 8.89628 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.049873 B = 0.007682 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.286303 B = 3643.918387 C = 3799.493802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.113 3.887 3 C -0.002 4.002 4 C -0.516 4.516 5 H 0.033 0.967 6 C 0.002 3.998 7 N -0.953 5.953 8 Si 0.948 3.052 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.237 1.237 12 C -0.097 4.097 13 C -0.187 4.187 14 C -0.073 4.073 15 C -0.151 4.151 16 C -0.084 4.084 17 C -0.168 4.168 18 C 0.072 3.928 19 O -0.323 6.323 20 H 0.057 0.943 21 H 0.086 0.914 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.265 0.735 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -16.133 10.419 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.076 3.924 3 C -0.039 4.039 4 C -0.554 4.554 5 H 0.051 0.949 6 C -0.194 4.194 7 N -0.594 5.594 8 Si 0.771 3.229 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.160 1.160 12 C -0.134 4.134 13 C -0.188 4.188 14 C -0.091 4.091 15 C -0.169 4.169 16 C -0.101 4.101 17 C -0.187 4.187 18 C 0.026 3.974 19 O -0.238 6.238 20 H 0.076 0.924 21 H 0.105 0.895 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.168 0.832 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.518 -15.840 10.134 18.972 hybrid contribution 0.264 1.087 -0.408 1.190 sum 2.782 -14.754 9.726 17.889 Atomic orbital electron populations 1.21982 0.93574 1.01231 1.03087 1.22814 0.94559 0.92411 0.82641 1.19667 0.96146 0.90780 0.97297 1.21256 1.28178 0.96462 1.09503 0.94894 1.26007 0.97889 0.98272 0.97269 1.70071 1.47002 1.11489 1.30796 0.85696 0.78812 0.77589 0.80799 1.19931 1.20786 1.16004 1.21908 1.03017 0.90478 0.97976 1.21080 1.07711 0.96566 0.93455 1.20686 0.97295 0.89756 1.01351 1.21427 1.02817 0.99408 0.93267 1.21209 0.97065 0.95856 0.96016 1.20584 1.07761 0.90405 0.99911 1.20282 0.96887 0.85620 0.94573 1.87021 1.79885 1.16809 1.40051 0.92353 0.89491 0.93787 0.92697 0.96307 0.92575 0.86949 0.89111 0.83194 0.82068 0.82335 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 8.51 71.98 0.61 -4.91 16 2 C 0.11 4.70 0.86 -10.21 -0.01 4.69 16 3 C 0.00 -0.08 3.36 29.85 0.10 0.02 16 4 C -0.52 -30.48 8.85 25.60 0.23 -30.26 16 5 H 0.03 2.19 6.80 -2.91 -0.02 2.17 16 6 C 0.00 0.11 5.47 84.65 0.46 0.57 16 7 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 8 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 12 C -0.10 -3.10 6.18 30.73 0.19 -2.91 16 13 C -0.19 -5.91 6.27 -19.53 -0.12 -6.03 16 14 C -0.07 -1.72 10.03 22.18 0.22 -1.49 16 15 C -0.15 -3.05 10.07 22.31 0.22 -2.82 16 16 C -0.08 -1.90 10.02 22.21 0.22 -1.68 16 17 C -0.17 -5.27 10.06 22.45 0.23 -5.04 16 18 C 0.07 2.71 6.94 22.67 0.16 2.87 16 19 O -0.32 -15.05 10.36 -95.10 -0.98 -16.03 16 20 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 21 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 22 H 0.04 2.01 6.62 -2.38 -0.02 1.99 16 23 H 0.06 2.41 7.20 -2.38 -0.02 2.39 16 24 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 25 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 26 H 0.11 2.90 7.92 -2.39 -0.02 2.88 16 27 H 0.09 2.78 7.92 -2.39 -0.02 2.77 16 28 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.12 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -72.04 259.98 4.77 -67.27 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.05 Total: 10.25 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 2.51 Total: -47.00 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.30 Total: -60.86 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.98 Total: -16.03 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -72.04 4.77 -67.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312957.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.251 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds