Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.66491 * 2 1 4 4 C 1.50700 * 109.47008 * 61.76432 * 3 2 1 5 5 H 1.08002 * 120.00084 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99701 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00147 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99762 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47219 * 89.99886 * 8 6 4 10 10 H 1.48498 * 109.47233 * 209.99975 * 8 6 4 11 11 H 1.48505 * 109.47426 * 330.00206 * 8 6 4 12 12 C 1.54706 * 110.90374 * 236.67883 * 2 1 3 13 13 C 1.51644 * 101.91556 * 266.91332 * 12 2 1 14 14 C 1.37748 * 132.17285 * 164.28724 * 13 12 2 15 15 C 1.38349 * 119.97686 * 180.54457 * 14 13 12 16 16 C 1.38285 * 119.76793 * 359.94996 * 15 14 13 17 17 C 1.37928 * 120.35267 * 359.85101 * 16 15 14 18 18 C 1.38879 * 107.03930 * 344.49810 * 13 12 2 19 19 O 1.36135 * 111.24232 * 359.10436 * 18 13 12 20 20 H 1.09006 * 109.46724 * 298.23927 * 1 2 3 21 21 H 1.09003 * 109.47085 * 58.23591 * 1 2 3 22 22 H 1.08996 * 109.47282 * 178.24077 * 1 2 3 23 23 H 1.09005 * 109.47122 * 181.76050 * 3 2 1 24 24 H 1.09002 * 109.47357 * 301.76208 * 3 2 1 25 25 H 0.96998 * 120.00027 * 180.02562 * 7 6 4 26 26 H 1.09001 * 110.94190 * 25.06849 * 12 2 1 27 27 H 1.09001 * 110.94050 * 148.76215 * 12 2 1 28 28 H 1.07996 * 120.00644 * 0.51618 * 14 13 12 29 29 H 1.08001 * 120.11568 * 179.97438 * 15 14 13 30 30 H 1.07996 * 119.82423 * 179.84626 * 16 15 14 31 31 H 1.08003 * 119.88307 * 180.37100 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 1.6183 2.1388 1.2518 5 1 1.0069 1.6193 1.9748 6 6 1.9856 3.4491 1.4739 7 7 2.7305 4.0815 0.5938 8 14 1.4251 4.3259 3.0252 9 1 2.4301 4.1224 4.0994 10 1 1.2829 5.7780 2.7491 11 1 0.1169 3.7743 3.4605 12 6 2.0820 -0.7939 -1.2076 13 6 2.2683 -2.1770 -0.6143 14 6 2.4570 -3.4133 -1.1918 15 6 2.5904 -4.5357 -0.3941 16 6 2.5347 -4.4106 0.9820 17 6 2.3500 -3.1731 1.5624 18 6 2.2160 -2.0379 0.7665 19 8 2.0393 -0.7365 1.1248 20 1 -0.3633 0.4863 0.9054 21 1 -0.3633 0.5410 -0.8738 22 1 -0.3633 -1.0271 -0.0315 23 1 3.1593 1.4090 -0.0316 24 1 1.6920 1.9625 -0.8738 25 1 2.9892 5.0031 0.7503 26 1 1.3596 -0.8142 -2.0236 27 1 3.0341 -0.3821 -1.5422 28 1 2.5002 -3.5063 -2.2669 29 1 2.7380 -5.5062 -0.8445 30 1 2.6362 -5.2866 1.6055 31 1 2.3136 -3.0834 2.6381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = -18.550133 kcal Electronic energy + Delta-G solvation = -14427.302565 eV Core-core repulsion = 12059.600790 eV Total energy + Delta-G solvation = -2367.701776 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.70894 -37.21323 -33.71372 -32.33288 -30.83639 -29.63942 -27.16345 -26.36846 -23.25431 -21.99220 -21.21625 -19.66687 -16.77869 -16.40909 -15.59120 -15.20802 -14.95314 -14.14386 -13.84965 -13.20227 -12.98710 -12.80827 -12.33613 -12.08093 -11.70972 -11.47658 -11.37926 -11.20978 -10.94338 -10.68638 -10.48897 -10.29080 -10.28659 -9.36309 -9.06001 -8.60672 -8.39073 -7.64707 -6.01995 -4.02579 1.58438 1.71612 3.33501 3.39428 3.43052 3.87489 4.08401 4.46250 4.91937 5.07277 5.23646 5.29633 5.35332 5.59284 5.63149 5.65646 5.86909 5.96541 6.12810 6.19103 6.34960 6.39389 6.60415 6.70842 6.75398 6.86226 6.87670 7.02161 7.46031 7.58180 7.89570 7.96605 8.35877 9.00929 9.60465 11.09685 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050317 B = 0.007433 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.342561 B = 3766.296466 C = 4004.628944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.113 3.887 3 C 0.033 3.967 4 C -0.509 4.509 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.105 4.105 13 C -0.177 4.177 14 C -0.074 4.074 15 C -0.167 4.167 16 C -0.090 4.090 17 C -0.154 4.154 18 C 0.121 3.879 19 O -0.278 6.278 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.040 0.960 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.261 0.739 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 -13.378 -2.819 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.077 3.923 3 C -0.004 4.004 4 C -0.547 4.547 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.143 4.143 13 C -0.178 4.178 14 C -0.092 4.092 15 C -0.185 4.185 16 C -0.108 4.108 17 C -0.173 4.173 18 C 0.074 3.926 19 O -0.191 6.191 20 H 0.095 0.905 21 H 0.086 0.914 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.738 -13.057 -2.646 13.435 hybrid contribution -0.188 0.531 0.677 0.880 sum -1.926 -12.526 -1.969 12.825 Atomic orbital electron populations 1.22060 0.94451 1.00285 1.03775 1.23136 0.93763 0.94901 0.80544 1.19270 0.96976 0.85647 0.98497 1.21105 1.32060 0.96531 1.05009 0.92085 1.24994 0.95223 0.97579 0.96686 1.69949 1.36940 1.11655 1.35215 0.86559 0.79151 0.78628 0.83487 1.20663 1.21291 1.19845 1.22005 1.02467 0.90616 0.99166 1.21006 1.06548 0.95683 0.94572 1.20261 0.98654 0.90851 0.99453 1.20870 1.05939 0.98045 0.93683 1.20749 0.98947 0.96170 0.94912 1.20255 1.07565 0.89779 0.99663 1.19897 0.93458 0.86492 0.92734 1.87087 1.78591 1.14536 1.38879 0.90546 0.91405 0.94133 0.95501 0.94333 0.92955 0.89902 0.89328 0.86424 0.86222 0.85889 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.60 37.16 0.32 -2.53 16 2 C 0.11 2.42 0.84 -89.72 -0.07 2.34 16 3 C 0.03 0.84 4.28 -27.88 -0.12 0.72 16 4 C -0.51 -14.27 8.20 -34.44 -0.28 -14.56 16 5 H 0.06 1.71 6.88 -52.49 -0.36 1.34 16 6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 8 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C -0.11 -1.90 6.19 -26.52 -0.16 -2.06 16 13 C -0.18 -3.10 6.27 -104.10 -0.65 -3.75 16 14 C -0.07 -1.07 10.03 -39.72 -0.40 -1.47 16 15 C -0.17 -2.17 10.07 -39.52 -0.40 -2.57 16 16 C -0.09 -1.20 10.02 -39.68 -0.40 -1.60 16 17 C -0.15 -2.50 10.06 -39.30 -0.40 -2.89 16 18 C 0.12 2.33 6.96 -38.95 -0.27 2.06 16 19 O -0.28 -6.28 10.23 -20.17 -0.21 -6.49 16 20 H 0.08 1.57 6.89 -51.93 -0.36 1.21 16 21 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 23 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 24 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 27 H 0.09 1.60 7.90 -51.93 -0.41 1.19 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 263.98 15.07 3.98 3.98 Total: -1.00 -30.47 263.98 -7.50 -37.97 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.06 Total: -1.49 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -2.93 Total: -24.80 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.21 Total: -6.49 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.47 -7.50 -37.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.418 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds