Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.66491 * 2 1 4 4 C 1.50700 * 109.47008 * 61.76432 * 3 2 1 5 5 H 1.08002 * 120.00084 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99701 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00147 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99762 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47219 * 89.99886 * 8 6 4 10 10 H 1.48498 * 109.47233 * 209.99975 * 8 6 4 11 11 H 1.48505 * 109.47426 * 330.00206 * 8 6 4 12 12 C 1.54706 * 110.90374 * 236.67883 * 2 1 3 13 13 C 1.51644 * 101.91556 * 266.91332 * 12 2 1 14 14 C 1.37748 * 132.17285 * 164.28724 * 13 12 2 15 15 C 1.38349 * 119.97686 * 180.54457 * 14 13 12 16 16 C 1.38285 * 119.76793 * 359.94996 * 15 14 13 17 17 C 1.37928 * 120.35267 * 359.85101 * 16 15 14 18 18 C 1.38879 * 107.03930 * 344.49810 * 13 12 2 19 19 O 1.36135 * 111.24232 * 359.10436 * 18 13 12 20 20 H 1.09006 * 109.46724 * 298.23927 * 1 2 3 21 21 H 1.09003 * 109.47085 * 58.23591 * 1 2 3 22 22 H 1.08996 * 109.47282 * 178.24077 * 1 2 3 23 23 H 1.09005 * 109.47122 * 181.76050 * 3 2 1 24 24 H 1.09002 * 109.47357 * 301.76208 * 3 2 1 25 25 H 0.96998 * 120.00027 * 180.02562 * 7 6 4 26 26 H 1.09001 * 110.94190 * 25.06849 * 12 2 1 27 27 H 1.09001 * 110.94050 * 148.76215 * 12 2 1 28 28 H 1.07996 * 120.00644 * 0.51618 * 14 13 12 29 29 H 1.08001 * 120.11568 * 179.97438 * 15 14 13 30 30 H 1.07996 * 119.82423 * 179.84626 * 16 15 14 31 31 H 1.08003 * 119.88307 * 180.37100 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 1.6183 2.1388 1.2518 5 1 1.0069 1.6193 1.9748 6 6 1.9856 3.4491 1.4739 7 7 2.7305 4.0815 0.5938 8 14 1.4251 4.3259 3.0252 9 1 2.4301 4.1224 4.0994 10 1 1.2829 5.7780 2.7491 11 1 0.1169 3.7743 3.4605 12 6 2.0820 -0.7939 -1.2076 13 6 2.2683 -2.1770 -0.6143 14 6 2.4570 -3.4133 -1.1918 15 6 2.5904 -4.5357 -0.3941 16 6 2.5347 -4.4106 0.9820 17 6 2.3500 -3.1731 1.5624 18 6 2.2160 -2.0379 0.7665 19 8 2.0393 -0.7365 1.1248 20 1 -0.3633 0.4863 0.9054 21 1 -0.3633 0.5410 -0.8738 22 1 -0.3633 -1.0271 -0.0315 23 1 3.1593 1.4090 -0.0316 24 1 1.6920 1.9625 -0.8738 25 1 2.9892 5.0031 0.7503 26 1 1.3596 -0.8142 -2.0236 27 1 3.0341 -0.3821 -1.5422 28 1 2.5002 -3.5063 -2.2669 29 1 2.7380 -5.5062 -0.8445 30 1 2.6362 -5.2866 1.6055 31 1 2.3136 -3.0834 2.6381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = -36.128136 kcal Electronic energy + Delta-G solvation = -14428.064805 eV Core-core repulsion = 12059.600790 eV Total energy + Delta-G solvation = -2368.464015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.11812 -38.49728 -35.60804 -34.07517 -32.33675 -30.85798 -29.08412 -27.77570 -25.21581 -23.24545 -22.49614 -21.25945 -18.59514 -17.93174 -17.13179 -16.75588 -16.48822 -15.84190 -15.15226 -14.69873 -14.45997 -14.28805 -13.90104 -13.66818 -13.31606 -13.16216 -12.88035 -12.78789 -12.54006 -12.51594 -12.23520 -11.97484 -11.65828 -11.21678 -11.02749 -10.60002 -9.76908 -8.96500 -8.21668 -6.29579 0.42104 0.51665 1.37901 1.39452 1.50335 2.39040 2.51093 2.86270 3.13198 3.60093 3.70208 4.05465 4.07825 4.26620 4.31650 4.41424 4.57467 4.68360 4.73082 4.81912 4.92962 5.05316 5.19713 5.25337 5.32294 5.48085 5.52399 5.60180 5.62172 5.74966 5.92432 6.18785 6.49252 6.81229 7.37431 8.90469 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050317 B = 0.007433 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.342561 B = 3766.296466 C = 4004.628944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.109 3.891 3 C 0.039 3.961 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.264 1.264 12 C -0.099 4.099 13 C -0.190 4.190 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.083 4.083 17 C -0.165 4.165 18 C 0.074 3.926 19 O -0.318 6.318 20 H 0.054 0.946 21 H 0.080 0.920 22 H 0.059 0.941 23 H -0.008 1.008 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -15.882 -2.995 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.072 3.928 3 C 0.002 3.998 4 C -0.561 4.561 5 H 0.074 0.926 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.203 1.203 11 H -0.189 1.189 12 C -0.136 4.136 13 C -0.191 4.191 14 C -0.093 4.093 15 C -0.170 4.170 16 C -0.100 4.100 17 C -0.184 4.184 18 C 0.029 3.971 19 O -0.233 6.233 20 H 0.073 0.927 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.010 0.990 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.095 0.905 28 H 0.164 0.836 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.297 -15.582 -2.825 16.002 hybrid contribution 0.042 1.161 0.716 1.364 sum -2.254 -14.421 -2.109 14.748 Atomic orbital electron populations 1.21959 0.93020 1.01412 1.03259 1.22943 0.94775 0.92783 0.82252 1.19073 0.94728 0.88873 0.97137 1.21411 1.31882 0.97008 1.05779 0.92614 1.25877 0.95286 0.98443 0.99994 1.70066 1.38045 1.12083 1.37133 0.85506 0.78948 0.77643 0.79329 1.20357 1.20302 1.18869 1.21872 1.02375 0.90917 0.98408 1.21065 1.07965 0.96285 0.93762 1.20675 0.97447 0.89895 1.01270 1.21414 1.02925 0.99247 0.93390 1.21226 0.96937 0.95990 0.95887 1.20587 1.07652 0.90161 0.99986 1.20300 0.96716 0.85757 0.94371 1.86978 1.79873 1.16809 1.39631 0.92675 0.90099 0.92165 0.98988 0.95561 0.92715 0.87436 0.90461 0.83567 0.82073 0.82095 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.60 71.98 0.62 -4.79 16 2 C 0.11 4.82 0.84 -10.21 -0.01 4.81 16 3 C 0.04 2.09 4.28 29.85 0.13 2.22 16 4 C -0.52 -30.48 8.20 25.60 0.21 -30.27 16 5 H 0.06 3.24 6.88 -2.91 -0.02 3.22 16 6 C 0.00 0.09 5.46 84.66 0.46 0.55 16 7 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 8 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 12 C -0.10 -3.57 6.19 30.73 0.19 -3.38 16 13 C -0.19 -6.43 6.27 -19.53 -0.12 -6.55 16 14 C -0.08 -1.91 10.03 22.18 0.22 -1.69 16 15 C -0.15 -3.21 10.07 22.31 0.22 -2.99 16 16 C -0.08 -1.90 10.02 22.21 0.22 -1.68 16 17 C -0.17 -5.16 10.06 22.45 0.23 -4.93 16 18 C 0.07 2.86 6.96 22.68 0.16 3.02 16 19 O -0.32 -15.01 10.23 -95.08 -0.97 -15.98 16 20 H 0.05 2.33 6.89 -2.38 -0.02 2.31 16 21 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 22 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 23 H -0.01 -0.49 8.11 -2.38 -0.02 -0.51 16 24 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 26 H 0.11 3.24 7.93 -2.39 -0.02 3.22 16 27 H 0.08 2.90 7.90 -2.39 -0.02 2.88 16 28 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -68.59 263.98 4.97 -63.61 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.10 Total: 7.28 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 2.53 Total: -45.68 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.28 Total: -56.84 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.97 Total: -15.98 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.59 4.97 -63.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.487 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds