Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46875 * 2 1 4 4 C 1.50700 * 109.47006 * 240.00628 * 2 1 3 5 5 H 1.07999 * 119.99647 * 240.00059 * 4 2 1 6 6 C 1.37883 * 119.99944 * 59.99304 * 4 2 1 7 7 N 1.31506 * 120.00354 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47261 * 59.99968 * 8 6 4 10 10 H 1.48497 * 109.46991 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47112 * 300.00189 * 8 6 4 12 12 C 1.50697 * 109.47323 * 120.00272 * 2 1 3 13 13 C 1.36143 * 120.39671 * 60.00138 * 12 2 1 14 14 C 1.40354 * 119.68738 * 179.97438 * 13 12 2 15 15 C 1.35160 * 120.24767 * 359.97438 * 14 13 12 16 16 N 1.35889 * 120.48910 * 0.02838 * 15 14 13 17 17 N 1.40167 * 134.01811 * 180.02562 * 16 15 14 18 18 N 1.28987 * 107.00807 * 179.97438 * 17 16 15 19 19 N 1.28564 * 110.82279 * 359.97438 * 18 17 16 20 20 C 1.32585 * 110.18766 * 0.02562 * 19 18 17 21 21 H 1.09000 * 109.46875 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47108 * 299.99162 * 1 2 3 23 23 H 1.08994 * 109.47502 * 59.99560 * 1 2 3 24 24 H 0.96996 * 120.00597 * 179.97438 * 7 6 4 25 25 H 1.08003 * 120.15599 * 0.02562 * 13 12 2 26 26 H 1.07998 * 119.87510 * 180.02562 * 14 13 12 27 27 H 1.08004 * 119.76008 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3211 -1.1200 -4.0081 9 1 1.8257 -2.5200 -4.0080 10 1 1.8266 -0.4195 -5.2205 11 1 3.8062 -1.1205 -4.0084 12 6 2.0324 -0.7104 1.2304 13 6 1.7085 -2.0138 1.4538 14 6 2.1850 -2.6611 2.6044 15 6 2.9623 -1.9956 3.4874 16 7 3.2908 -0.6945 3.2730 17 7 4.0559 0.2456 3.9769 18 7 4.0264 1.3413 3.2969 19 7 3.3221 1.1987 2.2309 20 6 2.8422 -0.0353 2.1612 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.7092 1.1620 -3.4843 25 1 1.0885 -2.5473 0.7485 26 1 1.9303 -3.6950 2.7844 27 1 3.3243 -2.5013 4.3704 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260348795.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = 118.075275 kcal Electronic energy + Delta-G solvation = -14214.178692 eV Core-core repulsion = 11781.153846 eV Total energy + Delta-G solvation = -2433.024846 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.31197 -39.83485 -36.96611 -34.54257 -32.96212 -32.60736 -30.12122 -27.21485 -25.80398 -25.31620 -24.05272 -21.74090 -19.49888 -18.67999 -17.95476 -17.71640 -16.92111 -16.47242 -15.40607 -14.80372 -14.48904 -14.06691 -13.72658 -13.60195 -13.51213 -13.09214 -13.00262 -12.76070 -12.36886 -12.16157 -12.06874 -11.91625 -11.51720 -11.03538 -10.93522 -10.45352 -9.28917 -8.08256 -6.24100 -0.46046 -0.32009 0.88649 1.16229 1.46562 1.49063 1.55602 2.28683 2.47731 2.82834 3.14354 3.23369 3.81580 3.93724 4.07322 4.32867 4.48781 4.73854 4.86011 4.90304 5.11400 5.16966 5.27632 5.37201 5.60317 5.63845 5.91613 6.05533 6.26829 6.84165 7.35509 7.44618 8.96709 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.036989 B = 0.009075 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.803981 B = 3084.516284 C = 3297.451860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.079 3.921 3 H 0.002 0.998 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.957 3.043 9 H -0.257 1.257 10 H -0.289 1.289 11 H -0.281 1.281 12 C -0.042 4.042 13 C -0.055 4.055 14 C -0.090 4.090 15 C 0.067 3.933 16 N -0.295 5.295 17 N -0.147 5.147 18 N -0.044 5.044 19 N -0.363 5.363 20 C 0.221 3.779 21 H 0.055 0.945 22 H 0.018 0.982 23 H 0.061 0.939 24 H 0.262 0.738 25 H 0.173 0.827 26 H 0.226 0.774 27 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -12.404 8.874 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 H 0.020 0.980 4 C -0.562 4.562 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.783 3.217 9 H -0.181 1.181 10 H -0.215 1.215 11 H -0.206 1.206 12 C -0.048 4.048 13 C -0.082 4.082 14 C -0.113 4.113 15 C -0.060 4.060 16 N -0.073 5.073 17 N -0.130 5.130 18 N -0.037 5.037 19 N -0.226 5.226 20 C -0.029 4.029 21 H 0.074 0.926 22 H 0.037 0.963 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.191 0.809 26 H 0.243 0.757 27 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.173 -11.019 9.455 14.520 hybrid contribution 0.029 -0.272 -1.234 1.264 sum 0.202 -11.291 8.221 13.968 Atomic orbital electron populations 1.21663 0.95925 1.00564 0.99754 1.17645 0.93842 0.94304 0.88206 0.97979 1.21324 1.31765 1.12754 0.90386 0.91748 1.25733 0.95084 0.95562 1.01951 1.70020 1.37305 1.23900 1.24239 0.85623 0.78267 0.79363 0.78469 1.18120 1.21454 1.20631 1.19908 0.94805 0.95594 0.94495 1.21715 0.97063 0.91696 0.97682 1.21883 0.94825 1.03377 0.91173 1.22640 1.00092 0.78823 1.04491 1.49023 1.30679 1.12293 1.15290 1.82400 1.18772 0.93688 1.18188 1.77719 1.10131 1.16566 0.99277 1.75095 1.16515 1.15953 1.15057 1.22972 0.99245 0.89899 0.90811 0.92576 0.96321 0.92008 0.92865 0.80916 0.75743 0.76156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.78 71.98 0.63 -4.82 15 2 C 0.08 3.87 2.50 -12.29 -0.03 3.84 15 3 H 0.00 0.12 7.80 -2.39 -0.02 0.10 15 4 C -0.52 -26.82 8.25 25.60 0.21 -26.61 15 5 H 0.06 3.12 7.60 -2.91 -0.02 3.10 15 6 C 0.02 0.85 5.30 84.66 0.45 1.30 15 7 N -0.92 -51.57 11.32 21.45 0.24 -51.33 15 8 Si 0.96 41.37 29.54 68.60 2.03 43.40 15 9 H -0.26 -10.24 7.11 99.48 0.71 -9.54 15 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 15 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 12 C -0.04 -1.67 4.76 -19.77 -0.09 -1.76 15 13 C -0.06 -1.51 8.74 22.30 0.19 -1.31 15 14 C -0.09 -1.50 9.99 22.08 0.22 -1.28 15 15 C 0.07 1.36 11.21 83.36 0.93 2.29 15 16 N -0.29 -10.02 3.94 -193.05 -0.76 -10.79 15 17 N -0.15 -5.68 13.99 37.02 0.52 -5.16 15 18 N -0.04 -1.97 13.36 37.02 0.49 -1.48 15 19 N -0.36 -17.47 12.05 -55.68 -0.67 -18.14 15 20 C 0.22 9.30 7.72 134.11 1.03 10.34 15 21 H 0.06 2.17 7.41 -2.39 -0.02 2.15 15 22 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 23 H 0.06 3.16 6.07 -2.39 -0.01 3.14 15 24 H 0.26 14.13 8.31 -92.71 -0.77 13.36 15 25 H 0.17 4.17 7.58 -2.91 -0.02 4.15 15 26 H 0.23 0.94 8.06 -2.91 -0.02 0.92 15 27 H 0.22 2.26 8.06 -2.91 -0.02 2.23 15 Total: -1.00 -71.05 241.79 6.59 -64.46 By element: Atomic # 1 Polarization: -4.13 SS G_CDS: 1.19 Total: -2.94 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.55 Total: -18.02 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -0.18 Total: -86.89 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -71.05 6.59 -64.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348795.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.539 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds