Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47234 * 2 1 4 4 C 1.50698 * 109.47517 * 119.99826 * 2 1 3 5 5 H 1.07998 * 120.00323 * 119.99255 * 4 2 1 6 6 C 1.37875 * 119.99782 * 300.00752 * 4 2 1 7 7 N 1.31512 * 120.00309 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99935 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47258 * 59.99685 * 8 6 4 10 10 H 1.48503 * 109.46916 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46992 * 299.99510 * 8 6 4 12 12 C 1.50705 * 109.47272 * 240.00064 * 2 1 3 13 13 C 1.40351 * 120.15256 * 300.32352 * 12 2 1 14 14 C 1.35168 * 120.24867 * 180.27095 * 13 12 2 15 15 N 1.35893 * 120.48100 * 359.41895 * 14 13 12 16 16 N 1.40173 * 134.01125 * 180.27496 * 15 14 13 17 17 N 1.28995 * 107.00239 * 180.02562 * 16 15 14 18 18 N 1.28561 * 110.82167 * 0.02562 * 17 16 15 19 19 C 1.32576 * 110.19180 * 359.97438 * 18 17 16 20 20 C 1.36150 * 120.15821 * 119.99795 * 12 2 1 21 21 H 1.08998 * 109.47039 * 59.99917 * 1 2 3 22 22 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46953 * 300.00090 * 1 2 3 24 24 H 0.97001 * 120.00298 * 180.02562 * 7 6 4 25 25 H 1.07998 * 119.87844 * 359.97174 * 13 12 2 26 26 H 1.08002 * 119.76202 * 179.70002 * 14 13 12 27 27 H 1.07997 * 120.39479 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1202 4.0079 9 1 3.8064 -1.1207 4.0082 10 1 1.8269 -0.4198 5.2204 11 1 1.8259 -2.5202 4.0077 12 6 2.0324 -0.7104 -1.2305 13 6 1.6897 -2.0521 -1.4592 14 6 2.1437 -2.6928 -2.5594 15 7 2.9259 -2.0438 -3.4614 16 7 3.5340 -2.4151 -4.6686 17 7 4.1684 -1.3804 -5.1054 18 7 4.0293 -0.3863 -4.3020 19 6 3.2734 -0.7343 -3.2700 20 6 2.8153 -0.0518 -2.1288 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7093 1.1617 3.4844 25 1 1.0649 -2.5760 -0.7511 26 1 1.8791 -3.7267 -2.7252 27 1 3.0819 0.9821 -1.9666 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260349243.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = 118.246617 kcal Electronic energy + Delta-G solvation = -13996.354272 eV Core-core repulsion = 11563.336856 eV Total energy + Delta-G solvation = -2433.017416 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.33992 -40.05019 -36.70134 -34.69503 -33.40145 -31.82701 -30.76344 -27.18599 -25.74483 -25.35515 -23.80934 -22.11849 -19.46283 -18.73721 -17.84285 -17.50855 -17.04959 -16.18168 -15.97598 -14.79667 -14.46815 -14.16176 -14.04515 -13.50642 -13.41648 -13.06077 -12.87462 -12.73959 -12.44271 -12.21413 -12.15946 -11.99036 -11.57310 -11.15478 -10.62387 -10.44234 -9.49345 -8.09087 -6.23221 -0.50917 -0.37577 0.81737 1.11226 1.48926 1.52028 1.56862 2.22134 2.48059 2.73524 3.13635 3.22522 3.70187 3.86728 4.05343 4.29493 4.38449 4.70268 4.79409 4.92830 5.05666 5.14432 5.26106 5.31959 5.53219 5.63977 5.88813 6.07589 6.28551 6.84790 7.29607 7.46272 8.95160 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.049885 B = 0.007381 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.154683 B = 3792.655001 C = 3897.395159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.070 3.930 3 H 0.021 0.979 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.912 5.912 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.291 1.291 11 H -0.265 1.265 12 C 0.031 3.969 13 C -0.103 4.103 14 C 0.099 3.901 15 N -0.305 5.305 16 N -0.141 5.141 17 N -0.035 5.035 18 N -0.364 5.364 19 C 0.240 3.760 20 C -0.130 4.130 21 H 0.029 0.971 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.262 0.738 25 H 0.192 0.808 26 H 0.222 0.778 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -6.285 -4.145 7.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 H 0.040 0.960 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.217 1.217 11 H -0.190 1.190 12 C 0.023 3.977 13 C -0.126 4.126 14 C -0.027 4.027 15 N -0.084 5.084 16 N -0.125 5.125 17 N -0.028 5.028 18 N -0.227 5.227 19 C -0.011 4.011 20 C -0.153 4.153 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.209 0.791 26 H 0.238 0.762 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.929 -6.433 -5.473 8.496 hybrid contribution -0.069 -0.012 1.706 1.707 sum -0.998 -6.444 -3.767 7.531 Atomic orbital electron populations 1.21683 0.95852 1.00645 1.00397 1.17909 0.94120 0.94811 0.88050 0.96045 1.21239 1.31768 1.12962 0.90293 0.91835 1.25567 0.95039 0.95472 1.01510 1.69974 1.37073 1.23694 1.24275 0.85748 0.78460 0.79190 0.79073 1.20452 1.21704 1.18963 1.20800 0.89005 0.94167 0.93753 1.21503 1.00453 0.94314 0.96292 1.22393 0.91954 1.01092 0.87269 1.48904 1.32364 1.10407 1.16705 1.82512 1.16554 1.18668 0.94807 1.77699 1.11413 0.94234 1.19482 1.75038 1.22643 1.21800 1.03223 1.22949 0.96098 0.84626 0.97434 1.20346 1.02201 1.02317 0.90464 0.95237 0.93151 0.91842 0.92826 0.79076 0.76189 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.79 71.98 0.63 -4.31 15 2 C 0.07 2.84 2.48 -12.29 -0.03 2.81 15 3 H 0.02 0.98 7.87 -2.39 -0.02 0.96 15 4 C -0.52 -23.80 8.26 25.60 0.21 -23.59 15 5 H 0.06 2.78 7.62 -2.91 -0.02 2.76 15 6 C 0.02 1.16 5.30 84.65 0.45 1.61 15 7 N -0.91 -46.45 11.32 21.45 0.24 -46.21 15 8 Si 0.95 38.54 29.54 68.60 2.03 40.57 15 9 H -0.28 -11.38 7.11 99.48 0.71 -10.67 15 10 H -0.29 -12.00 7.11 99.48 0.71 -11.29 15 11 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 12 C 0.03 1.03 4.72 -19.83 -0.09 0.94 15 13 C -0.10 -2.68 8.72 22.08 0.19 -2.49 15 14 C 0.10 2.34 11.21 83.36 0.93 3.27 15 15 N -0.31 -9.69 3.94 -193.05 -0.76 -10.45 15 16 N -0.14 -4.94 13.99 37.02 0.52 -4.42 15 17 N -0.04 -1.34 13.36 37.02 0.49 -0.85 15 18 N -0.36 -14.07 12.27 -55.69 -0.68 -14.75 15 19 C 0.24 8.48 8.03 134.11 1.08 9.55 15 20 C -0.13 -4.35 9.72 22.37 0.22 -4.13 15 21 H 0.03 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.05 1.73 7.41 -2.39 -0.02 1.71 15 23 H 0.06 2.86 6.07 -2.39 -0.01 2.85 15 24 H 0.26 12.98 8.31 -92.71 -0.77 12.21 15 25 H 0.19 4.19 7.60 -2.91 -0.02 4.17 15 26 H 0.22 3.08 8.06 -2.91 -0.02 3.05 15 27 H 0.16 5.21 7.94 -2.91 -0.02 5.19 15 Total: -1.00 -56.67 241.98 6.62 -50.06 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.19 Total: 2.40 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 3.59 Total: -16.35 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -0.19 Total: -76.68 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -56.67 6.62 -50.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349243.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.304 kcal (2) G-P(sol) polarization free energy of solvation -56.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds