Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38394 * 120.01467 * 2 1 4 4 C 1.38242 * 119.77289 * 180.02562 * 3 2 1 5 5 C 1.37969 * 120.35021 * 359.78659 * 4 3 2 6 6 C 1.39245 * 120.23673 * 0.04541 * 5 4 3 7 7 C 1.37697 * 120.01200 * 180.02562 * 2 1 3 8 8 C 1.51643 * 132.17901 * 0.85315 * 7 2 1 9 9 C 1.54706 * 101.94607 * 164.42967 * 8 7 2 10 10 H 1.08999 * 110.75107 * 266.90894 * 9 8 7 11 11 C 1.53002 * 110.74556 * 143.73782 * 9 8 7 12 12 C 1.50709 * 109.46839 * 174.99901 * 11 9 8 13 13 H 1.07997 * 119.99722 * 0.02562 * 12 11 9 14 14 C 1.37869 * 119.99793 * 180.02562 * 12 11 9 15 15 N 1.31517 * 119.99997 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00320 * 0.02562 * 14 12 11 17 17 H 1.48491 * 109.47422 * 89.99740 * 16 14 12 18 18 H 1.48503 * 109.47373 * 210.00195 * 16 14 12 19 19 H 1.48500 * 109.46724 * 329.99591 * 16 14 12 20 20 O 1.36135 * 129.90231 * 180.92812 * 6 5 4 21 21 H 1.08998 * 109.47750 * 89.99840 * 1 2 3 22 22 H 1.09003 * 109.47297 * 210.00134 * 1 2 3 23 23 H 1.09006 * 109.47275 * 329.99403 * 1 2 3 24 24 H 1.08002 * 120.11191 * 0.04932 * 3 2 1 25 25 H 1.08004 * 119.82467 * 179.81646 * 4 3 2 26 26 H 1.08004 * 119.88521 * 180.02562 * 5 4 3 27 27 H 1.09002 * 110.93774 * 282.59342 * 8 7 2 28 28 H 1.09000 * 110.93667 * 46.26940 * 8 7 2 29 29 H 1.08993 * 109.47301 * 295.00143 * 11 9 8 30 30 H 1.08999 * 109.47185 * 55.00723 * 11 9 8 31 31 H 0.96997 * 120.00180 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 -0.0005 5 6 4.2737 -0.0010 0.0034 6 6 3.5848 -1.2111 0.0069 7 6 2.1957 -1.1923 -0.0005 8 6 1.7320 -2.6360 -0.0179 9 6 3.0273 -3.3837 -0.4134 10 1 3.0763 -3.5269 -1.4929 11 6 3.1219 -4.7262 0.3143 12 6 4.3271 -5.4829 -0.1821 13 1 4.9621 -5.0493 -0.9405 14 6 4.6188 -6.7285 0.3318 15 7 5.6707 -7.3886 -0.1010 16 14 3.5198 -7.4787 1.6429 17 1 2.4455 -8.2721 0.9938 18 1 4.3283 -8.3640 2.5193 19 1 2.9123 -6.3964 2.4582 20 8 4.0601 -2.4866 0.0279 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.6613 2.1349 0.0008 25 1 4.1227 2.1272 -0.0035 26 1 5.3538 0.0032 0.0033 27 1 1.3887 -2.9468 0.9689 28 1 0.9524 -2.7858 -0.7649 29 1 3.2180 -4.5526 1.3860 30 1 2.2216 -5.3091 0.1199 31 1 5.8757 -8.2651 0.2602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260434161.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -20.089722 kcal Electronic energy + Delta-G solvation = -14168.112739 eV Core-core repulsion = 11800.344201 eV Total energy + Delta-G solvation = -2367.768537 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.70713 -37.39302 -33.57630 -32.78079 -31.11152 -30.38645 -27.60181 -26.25901 -23.19969 -21.80531 -20.57049 -20.45639 -16.95623 -16.66818 -16.20083 -15.47932 -14.92663 -14.01454 -13.64319 -13.46766 -13.38778 -12.76500 -12.64655 -12.34387 -12.24116 -11.84568 -11.69359 -11.54433 -11.26453 -10.70142 -10.57294 -10.40775 -9.83576 -9.68894 -9.25519 -8.57287 -8.47403 -7.72793 -6.05740 -4.04372 1.49946 1.63584 3.27726 3.36188 3.38616 3.78889 3.98106 4.42206 4.76530 4.93811 5.08349 5.18885 5.27470 5.37819 5.51910 5.55971 5.62747 5.68340 5.79001 5.84319 6.10495 6.17875 6.32724 6.40381 6.58719 6.64753 6.75612 6.85233 7.02729 7.21548 7.66015 7.80822 8.49563 8.99519 9.54380 11.07701 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.007142 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.904564 B = 3919.656991 C = 4320.951607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.041 4.041 3 C -0.166 4.166 4 C -0.084 4.084 5 C -0.156 4.156 6 C 0.123 3.877 7 C -0.180 4.180 8 C -0.110 4.110 9 C 0.100 3.900 10 H 0.081 0.919 11 C -0.011 4.011 12 C -0.518 4.518 13 H 0.075 0.925 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 O -0.283 6.283 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 14.798 0.585 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.041 4.041 3 C -0.184 4.184 4 C -0.102 4.102 5 C -0.175 4.175 6 C 0.076 3.924 7 C -0.181 4.181 8 C -0.147 4.147 9 C 0.044 3.956 10 H 0.099 0.901 11 C -0.048 4.048 12 C -0.556 4.556 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.190 1.190 20 O -0.196 6.196 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.139 0.861 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.358 14.505 0.668 17.275 hybrid contribution -0.514 -0.536 0.646 0.984 sum -9.872 13.969 1.314 17.156 Atomic orbital electron populations 1.20765 0.91456 1.02567 1.02180 1.19076 0.95621 0.91345 0.98100 1.20781 0.94106 0.96823 1.06707 1.20746 0.94085 0.96808 0.98595 1.20250 1.00169 0.89201 1.07853 1.19855 0.91916 0.87066 0.93571 1.20785 0.94051 0.95275 1.07970 1.21972 0.99536 0.90179 1.03001 1.23525 0.81893 0.90711 0.99426 0.90113 1.19764 0.98564 0.89997 0.96513 1.21016 1.09515 1.01453 1.23610 0.90646 1.24998 0.95094 0.96891 0.96367 1.69906 1.26806 1.13769 1.43412 0.86819 0.80876 0.79466 0.82396 1.20169 1.21184 1.19021 1.87053 1.39769 1.12069 1.80723 0.91228 0.91552 0.91689 0.86146 0.85711 0.85703 0.89546 0.89784 0.95292 0.94755 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.91 36.00 0.36 -0.85 16 2 C -0.04 -0.58 5.87 -104.77 -0.61 -1.19 16 3 C -0.17 -2.11 9.73 -39.52 -0.38 -2.50 16 4 C -0.08 -1.10 10.02 -39.68 -0.40 -1.50 16 5 C -0.16 -2.49 10.06 -39.31 -0.40 -2.88 16 6 C 0.12 2.32 7.03 -38.95 -0.27 2.04 16 7 C -0.18 -3.03 6.07 -104.10 -0.63 -3.66 16 8 C -0.11 -1.85 6.17 -26.52 -0.16 -2.01 16 9 C 0.10 2.09 3.50 -25.83 -0.09 2.00 16 10 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 11 C -0.01 -0.27 3.73 -27.88 -0.10 -0.37 16 12 C -0.52 -14.96 9.60 -34.44 -0.33 -15.29 16 13 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 16 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 O -0.28 -6.33 10.75 -20.17 -0.22 -6.55 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 23 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 24 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 25 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 26 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 27 H 0.09 1.41 7.92 -51.93 -0.41 1.00 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 30 H 0.03 0.77 7.57 -51.93 -0.39 0.38 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 263.55 15.07 3.97 3.97 Total: -1.00 -31.79 263.55 -7.39 -39.18 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.13 Total: -1.97 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.13 Total: -24.32 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.22 Total: -6.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.79 -7.39 -39.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434161.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.091 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds