Wall clock time and date at job start Mon Mar 30 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39992 * 125.88844 * 2 1 4 4 C 1.30214 * 109.70619 * 180.26581 * 3 2 1 5 5 C 1.41259 * 108.53262 * 359.97438 * 4 3 2 6 6 C 1.36935 * 125.89059 * 180.30331 * 2 1 3 7 7 N 1.32801 * 133.41096 * 359.75724 * 6 2 1 8 8 C 1.31695 * 121.85073 * 179.97438 * 7 6 2 9 9 C 1.38348 * 121.62166 * 0.02562 * 8 7 6 10 10 C 1.39154 * 119.43104 * 0.02562 * 9 8 7 11 11 N 1.38537 * 121.03703 * 179.97438 * 10 9 8 12 12 C 1.36836 * 119.99919 * 0.02562 * 11 10 9 13 13 H 1.08001 * 120.00021 * 0.02562 * 12 11 10 14 14 C 1.38831 * 119.99949 * 180.02562 * 12 11 10 15 15 N 1.31545 * 119.99591 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99903 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47219 * 59.99984 * 16 14 12 18 18 H 1.48500 * 109.46926 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46976 * 299.99841 * 16 14 12 20 20 H 1.08997 * 109.47202 * 269.68897 * 1 2 3 21 21 H 1.09002 * 109.46837 * 29.69464 * 1 2 3 22 22 H 1.08996 * 109.46881 * 149.69699 * 1 2 3 23 23 H 1.08000 * 125.73572 * 179.97438 * 4 3 2 24 24 H 1.08004 * 119.19091 * 180.02562 * 8 7 6 25 25 H 1.07998 * 120.28558 * 180.02562 * 9 8 7 26 26 H 0.96994 * 119.99922 * 180.02562 * 11 10 9 27 27 H 0.97004 * 119.99656 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2857 1.1342 0.0000 4 6 3.5362 0.7713 -0.0057 5 6 3.5941 -0.6401 -0.0091 6 6 2.2678 -1.1093 -0.0059 7 7 2.0212 -2.4143 -0.0087 8 6 2.9914 -3.3048 -0.0150 9 6 4.3224 -2.9274 -0.0186 10 6 4.6497 -1.5749 -0.0148 11 7 5.9714 -1.1598 -0.0177 12 6 6.9792 -2.0854 -0.0248 13 1 6.7442 -3.1395 -0.0286 14 6 8.3037 -1.6694 -0.0271 15 7 8.5898 -0.3855 -0.0219 16 14 9.6795 -2.9330 -0.0375 17 1 9.5666 -3.7776 -1.2536 18 1 10.9911 -2.2366 -0.0378 19 1 9.5744 -3.7891 1.1714 20 1 -0.3633 -0.0056 1.0276 21 1 -0.3633 0.8927 -0.5091 22 1 -0.3633 -0.8872 -0.5185 23 1 4.3863 1.4374 -0.0075 24 1 2.7419 -4.3556 -0.0175 25 1 5.1008 -3.6761 -0.0242 26 1 6.1824 -0.2131 -0.0146 27 1 9.5153 -0.0948 -0.0231 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436916.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:13 Heat of formation + Delta-G solvation = 82.195295 kcal Electronic energy + Delta-G solvation = -13932.336294 eV Core-core repulsion = 11497.755575 eV Total energy + Delta-G solvation = -2434.580718 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.23652 -39.03376 -37.29399 -34.60086 -33.55946 -30.77897 -30.37730 -27.68551 -26.61881 -24.17208 -23.15208 -21.28029 -19.99008 -18.77959 -17.58880 -17.14409 -16.52647 -16.23040 -15.90965 -15.03558 -14.92318 -14.42061 -14.39876 -13.56719 -13.50135 -13.39233 -12.97938 -12.91757 -12.51289 -12.21804 -12.11951 -11.68435 -11.01937 -10.13564 -10.05546 -9.41781 -8.61058 -8.58010 -5.86598 0.27958 0.86269 1.45141 1.51293 1.53587 1.56079 1.77542 2.23326 2.90283 3.18658 3.38077 3.54196 3.88985 4.17010 4.27734 4.49976 4.56601 4.70952 4.79064 4.82543 5.05681 5.33850 5.47890 5.52656 5.69302 5.98088 6.32505 6.68285 6.73612 7.27211 7.42804 7.48858 8.54975 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.051152 B = 0.007738 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.256348 B = 3617.414917 C = 4149.525960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.408 5.408 3 N -0.299 5.299 4 C 0.088 3.912 5 C -0.334 4.334 6 C 0.336 3.664 7 N -0.606 5.606 8 C 0.201 3.799 9 C -0.339 4.339 10 C 0.265 3.735 11 N -0.530 5.530 12 C -0.328 4.328 13 H 0.116 0.884 14 C -0.016 4.016 15 N -0.912 5.912 16 Si 1.003 2.997 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.263 1.263 20 H 0.074 0.926 21 H 0.098 0.902 22 H 0.091 0.909 23 H 0.197 0.803 24 H 0.184 0.816 25 H 0.132 0.868 26 H 0.397 0.603 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 -2.497 -0.105 7.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.200 5.200 3 N -0.116 5.116 4 C -0.105 4.105 5 C -0.350 4.350 6 C 0.095 3.905 7 N -0.333 5.333 8 C 0.041 3.959 9 C -0.370 4.370 10 C 0.132 3.868 11 N -0.129 5.129 12 C -0.458 4.458 13 H 0.134 0.866 14 C -0.218 4.218 15 N -0.549 5.549 16 Si 0.826 3.174 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.187 1.187 20 H 0.093 0.907 21 H 0.116 0.884 22 H 0.109 0.891 23 H 0.213 0.787 24 H 0.201 0.799 25 H 0.150 0.850 26 H 0.232 0.768 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.949 -1.656 -0.096 8.121 hybrid contribution 2.301 -0.154 0.015 2.306 sum -5.648 -1.810 -0.082 5.932 Atomic orbital electron populations 1.21876 0.72254 1.04795 1.03584 1.48353 1.06706 1.00137 1.64848 1.76641 1.01880 1.08052 1.25011 1.23726 0.95411 0.93574 0.97799 1.19041 0.94361 0.94496 1.27083 1.19119 0.87754 0.88949 0.94650 1.66758 1.37269 0.98059 1.31165 1.22541 0.86868 0.98489 0.88014 1.21154 0.98302 0.93713 1.23824 1.17731 0.83104 0.93030 0.92961 1.40988 1.01815 1.09264 1.60836 1.20188 0.85442 0.91408 1.48744 0.86614 1.26317 1.00903 0.98927 0.95628 1.69748 1.21910 1.15796 1.47446 0.84805 0.75786 0.77214 0.79632 1.18724 1.20571 1.18740 0.90706 0.88377 0.89076 0.78654 0.79915 0.85046 0.76849 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.06 11.48 127.77 1.47 4.53 15 2 N -0.41 -15.50 4.06 -366.63 -1.49 -16.99 15 3 N -0.30 -11.75 12.44 -56.42 -0.70 -12.46 15 4 C 0.09 3.52 11.84 85.68 1.01 4.54 15 5 C -0.33 -14.72 6.12 -21.26 -0.13 -14.85 15 6 C 0.34 14.28 7.99 134.02 1.07 15.35 15 7 N -0.61 -24.47 10.39 -193.27 -2.01 -26.47 15 8 C 0.20 7.40 11.14 84.74 0.94 8.34 15 9 C -0.34 -13.99 9.36 22.52 0.21 -13.78 15 10 C 0.27 12.07 6.69 38.98 0.26 12.33 15 11 N -0.53 -25.40 5.42 -183.30 -0.99 -26.39 15 12 C -0.33 -15.89 9.57 84.05 0.80 -15.09 15 13 H 0.12 5.29 5.76 -2.91 -0.02 5.28 15 14 C -0.02 -0.74 5.50 84.88 0.47 -0.28 15 15 N -0.91 -46.15 13.05 21.65 0.28 -45.87 15 16 Si 1.00 37.59 29.55 68.60 2.03 39.62 15 17 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 18 H -0.28 -10.42 7.11 99.48 0.71 -9.71 15 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 20 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.20 6.79 8.06 -2.91 -0.02 6.77 15 24 H 0.18 5.05 8.06 -2.91 -0.02 5.03 15 25 H 0.13 5.17 6.07 -2.91 -0.02 5.15 15 26 H 0.40 19.30 7.74 -92.71 -0.72 18.58 15 27 H 0.28 13.44 8.31 -92.71 -0.77 12.67 15 Total: -1.00 -58.88 244.35 3.72 -55.16 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.49 Total: 32.30 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.11 Total: 1.09 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -4.91 Total: -128.18 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -58.88 3.72 -55.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436916.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.360 kcal (2) G-P(sol) polarization free energy of solvation -58.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds