Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38388 * 120.00929 * 2 1 4 4 C 1.38239 * 119.77151 * 179.97438 * 3 2 1 5 5 C 1.37971 * 120.35049 * 0.20966 * 4 3 2 6 6 C 1.39245 * 120.23517 * 359.95159 * 5 4 3 7 7 C 1.37692 * 120.01219 * 179.97438 * 2 1 3 8 8 C 1.51649 * 132.17961 * 359.13928 * 7 2 1 9 9 H 1.08994 * 110.93512 * 313.76879 * 8 7 2 10 10 C 1.52998 * 110.93134 * 77.41369 * 8 7 2 11 11 C 1.50707 * 109.46683 * 184.99667 * 10 8 7 12 12 H 1.08004 * 119.99799 * 0.02562 * 11 10 8 13 13 C 1.37874 * 119.99896 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00093 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47106 * 60.00120 * 15 13 11 17 17 H 1.48504 * 109.47498 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47114 * 300.00467 * 15 13 11 19 19 C 1.54713 * 101.94437 * 195.57297 * 8 7 2 20 20 O 1.36134 * 129.90189 * 179.07275 * 6 5 4 21 21 H 1.09000 * 109.46716 * 90.00825 * 1 2 3 22 22 H 1.09001 * 109.47203 * 210.00017 * 1 2 3 23 23 H 1.08988 * 109.47470 * 330.00727 * 1 2 3 24 24 H 1.08001 * 120.11518 * 359.94488 * 3 2 1 25 25 H 1.08004 * 119.82633 * 180.18277 * 4 3 2 26 26 H 1.07999 * 119.88292 * 179.97438 * 5 4 3 27 27 H 1.08992 * 109.47030 * 304.99369 * 10 8 7 28 28 H 1.09000 * 109.47220 * 65.00231 * 10 8 7 29 29 H 0.97001 * 119.99929 * 179.97438 * 14 13 11 30 30 H 1.09003 * 110.74433 * 93.09541 * 19 8 7 31 31 H 1.08996 * 110.74680 * 216.44363 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1926 0.0005 5 6 4.2738 -0.0009 -0.0033 6 6 3.5849 -1.2110 -0.0067 7 6 2.1958 -1.1923 0.0005 8 6 1.7321 -2.6361 0.0181 9 1 0.9522 -2.7856 0.7646 10 6 1.2504 -3.0723 -1.3670 11 6 0.6847 -4.4668 -1.2859 12 1 0.6699 -4.9894 -0.3408 13 6 0.1851 -5.0750 -2.4179 14 7 0.2027 -4.4384 -3.5686 15 14 -0.5167 -6.8032 -2.3172 16 1 -1.6584 -6.8193 -1.3679 17 1 -0.9842 -7.2268 -3.6616 18 1 0.5351 -7.7377 -1.8423 19 6 3.0276 -3.3836 0.4136 20 8 4.0603 -2.4864 -0.0276 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5137 24 1 1.6612 2.1348 -0.0009 25 1 4.1226 2.1274 0.0035 26 1 5.3538 0.0035 -0.0033 27 1 0.4782 -2.3867 -1.7157 28 1 2.0886 -3.0602 -2.0637 29 1 -0.1484 -4.8665 -4.3651 30 1 3.0765 -3.5268 1.4930 31 1 3.0966 -4.3387 -0.1072 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260474074.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -24.604529 kcal Electronic energy + Delta-G solvation = -14435.568204 eV Core-core repulsion = 12067.603890 eV Total energy + Delta-G solvation = -2367.964314 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65497 -37.17359 -34.10932 -32.44742 -31.07652 -29.21039 -27.11516 -26.00283 -23.55300 -21.66207 -21.49419 -19.45574 -16.71293 -16.24041 -15.92705 -15.50500 -15.05742 -14.45159 -13.37650 -13.25827 -13.17094 -12.60399 -12.40434 -12.15917 -11.86269 -11.50323 -11.45245 -11.11515 -10.92634 -10.80308 -10.43391 -10.25316 -9.95698 -9.61803 -9.14865 -8.41044 -8.18603 -7.60597 -6.05092 -4.09514 1.73250 1.79155 3.29624 3.34867 3.36336 3.86006 4.12198 4.40886 5.08649 5.17694 5.29278 5.34364 5.42274 5.60550 5.69650 5.76066 5.89050 5.99065 6.05386 6.17810 6.37921 6.49212 6.58903 6.72608 6.80032 6.85952 7.02357 7.09005 7.58693 7.70329 7.72770 7.93108 8.30974 8.96386 9.54911 11.05646 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.040063 B = 0.008151 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.730815 B = 3434.203878 C = 3787.631348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.038 4.038 3 C -0.159 4.159 4 C -0.094 4.094 5 C -0.155 4.155 6 C 0.109 3.891 7 C -0.152 4.152 8 C -0.070 4.070 9 H 0.083 0.917 10 C 0.039 3.961 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.058 3.942 20 O -0.308 6.308 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.023 0.977 28 H 0.021 0.979 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 8.275 7.665 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.038 4.038 3 C -0.177 4.177 4 C -0.112 4.112 5 C -0.174 4.174 6 C 0.063 3.937 7 C -0.153 4.153 8 C -0.089 4.089 9 H 0.101 0.899 10 C 0.002 3.998 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.017 4.017 20 O -0.222 6.222 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.610 8.149 7.411 11.591 hybrid contribution -0.519 -1.009 -0.083 1.138 sum 3.091 7.140 7.328 10.688 Atomic orbital electron populations 1.20771 0.91185 1.02218 1.02795 1.19134 0.96010 0.91229 0.97454 1.20817 0.94038 0.96938 1.05886 1.20669 0.94119 0.96620 0.99832 1.20119 0.99576 0.89233 1.08442 1.19659 0.92201 0.86061 0.95780 1.21020 0.93570 0.96155 1.04530 1.21628 0.96763 0.87565 1.02926 0.89895 1.19048 0.96522 0.96039 0.88148 1.21153 1.40553 1.00036 0.94702 0.92550 1.25009 0.95864 0.97888 0.95416 1.69960 1.45994 1.37617 0.99362 0.86653 0.79500 0.84660 0.77172 1.20202 1.21248 1.20177 1.23972 0.84977 0.94128 0.98585 1.86774 1.39965 1.13503 1.81944 0.90742 0.91188 0.92168 0.86187 0.85909 0.86216 0.95825 0.96099 0.92812 0.92156 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.91 36.01 0.36 -1.39 16 2 C -0.04 -0.66 5.87 -104.76 -0.61 -1.28 16 3 C -0.16 -2.38 9.72 -39.53 -0.38 -2.77 16 4 C -0.09 -1.36 10.02 -39.68 -0.40 -1.76 16 5 C -0.15 -2.55 10.06 -39.31 -0.40 -2.94 16 6 C 0.11 2.12 7.03 -38.95 -0.27 1.85 16 7 C -0.15 -3.00 5.43 -104.10 -0.56 -3.57 16 8 C -0.07 -1.48 2.60 -90.40 -0.23 -1.72 16 9 H 0.08 1.67 7.91 -51.93 -0.41 1.26 16 10 C 0.04 1.01 4.47 -27.88 -0.12 0.89 16 11 C -0.53 -14.36 8.48 -34.44 -0.29 -14.65 16 12 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C 0.06 1.12 7.42 38.06 0.28 1.41 16 20 O -0.31 -6.33 11.10 -20.17 -0.22 -6.55 16 21 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 22 H 0.07 1.12 7.57 -51.93 -0.39 0.72 16 23 H 0.06 0.75 8.09 -51.94 -0.42 0.33 16 24 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 25 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 26 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.02 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.12 2.35 7.47 -51.93 -0.39 1.96 16 LS Contribution 265.52 15.07 4.00 4.00 Total: -1.00 -30.21 265.52 -7.36 -37.57 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.11 Total: -1.10 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -2.74 Total: -24.33 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.22 Total: -6.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.21 -7.36 -37.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260474074.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.962 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds