Wall clock time and date at job start Mon Mar 30 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38394 * 120.01109 * 2 1 4 4 C 1.38243 * 119.76754 * 179.97438 * 3 2 1 5 5 C 1.37976 * 120.35019 * 0.17542 * 4 3 2 6 6 C 1.39246 * 120.24176 * 0.03815 * 5 4 3 7 7 C 1.37691 * 120.01218 * 179.97438 * 2 1 3 8 8 C 1.51647 * 132.18518 * 359.63773 * 7 2 1 9 9 H 1.09008 * 110.97008 * 77.55261 * 8 7 2 10 10 C 1.53005 * 110.93896 * 313.87678 * 8 7 2 11 11 C 1.50702 * 109.46434 * 186.94895 * 10 8 7 12 12 H 1.07998 * 120.00326 * 0.02562 * 11 10 8 13 13 C 1.37879 * 119.99543 * 179.97438 * 11 10 8 14 14 N 1.31514 * 120.00098 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99852 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47119 * 269.99639 * 15 13 11 17 17 H 1.48497 * 109.47140 * 29.99998 * 15 13 11 18 18 H 1.48504 * 109.46917 * 150.00098 * 15 13 11 19 19 C 1.54709 * 101.90814 * 195.72041 * 8 7 2 20 20 O 1.36129 * 129.88320 * 179.55420 * 6 5 4 21 21 H 1.09000 * 109.46857 * 97.21425 * 1 2 3 22 22 H 1.09000 * 109.47142 * 217.21728 * 1 2 3 23 23 H 1.08997 * 109.46676 * 337.21459 * 1 2 3 24 24 H 1.08002 * 120.11788 * 359.97438 * 3 2 1 25 25 H 1.08000 * 119.82936 * 180.14927 * 4 3 2 26 26 H 1.07998 * 119.87804 * 180.02562 * 5 4 3 27 27 H 1.08993 * 109.47170 * 66.94898 * 10 8 7 28 28 H 1.08998 * 109.47012 * 306.94559 * 10 8 7 29 29 H 0.96997 * 119.99753 * 180.02562 * 14 13 11 30 30 H 1.09000 * 110.74122 * 92.96245 * 19 8 7 31 31 H 1.08996 * 110.74613 * 216.11951 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1984 0.0000 4 6 3.5816 1.1925 0.0005 5 6 4.2737 -0.0011 -0.0026 6 6 3.5849 -1.2112 -0.0071 7 6 2.1957 -1.1923 0.0005 8 6 1.7321 -2.6361 0.0083 9 1 1.3985 -2.9441 -0.9828 10 6 0.6276 -2.8502 1.0452 11 6 0.3116 -4.3203 1.1461 12 1 0.8454 -5.0307 0.5325 13 6 -0.6584 -4.7582 2.0227 14 7 -0.9346 -6.0410 2.1105 15 14 -1.5812 -3.5293 3.0846 16 1 -0.8577 -3.3424 4.3679 17 1 -1.6707 -2.2291 2.3729 18 1 -2.9489 -4.0396 3.3573 19 6 3.0241 -3.3841 0.4141 20 8 4.0608 -2.4865 -0.0188 21 1 -0.3633 -0.1291 -1.0195 22 1 -0.3633 -0.8184 0.6216 23 1 -0.3632 0.9475 0.3980 24 1 1.6613 2.1349 -0.0004 25 1 4.1228 2.1271 0.0030 26 1 5.3537 0.0032 -0.0017 27 1 -0.2667 -2.3064 0.7410 28 1 0.9636 -2.4834 2.0150 29 1 -1.6172 -6.3490 2.7269 30 1 3.0635 -3.5288 1.4937 31 1 3.0961 -4.3399 -0.1049 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260474080.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:08 Heat of formation + Delta-G solvation = -33.205180 kcal Electronic energy + Delta-G solvation = -14527.716934 eV Core-core repulsion = 12159.379668 eV Total energy + Delta-G solvation = -2368.337266 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.12652 -38.51778 -36.18051 -34.26139 -32.64665 -30.75822 -29.34319 -27.34149 -25.20354 -22.97850 -22.89122 -21.04269 -19.00388 -18.05908 -17.39048 -16.96052 -16.35884 -16.02911 -15.16063 -14.81357 -14.68577 -14.47286 -14.39859 -13.93360 -13.38436 -13.03298 -12.92567 -12.81913 -12.50952 -12.20264 -12.03287 -11.77367 -11.65702 -11.49355 -11.02315 -10.75076 -9.54236 -9.03403 -8.30234 -6.34070 0.41290 0.45991 1.34950 1.35842 1.47014 2.33999 2.39490 2.81492 3.04925 3.61171 3.75490 3.95483 4.13166 4.15674 4.34085 4.50150 4.58957 4.65045 4.71781 4.77604 4.82957 4.91574 4.98368 5.19138 5.30595 5.44127 5.49209 5.53051 5.64976 5.70831 5.80860 6.23773 6.30433 6.72533 7.30122 8.85735 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.034956 B = 0.009635 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.815452 B = 2905.468426 C = 3481.238312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.156 4.156 6 C 0.076 3.924 7 C -0.184 4.184 8 C -0.060 4.060 9 H 0.079 0.921 10 C 0.005 3.995 11 C -0.528 4.528 12 H 0.041 0.959 13 C 0.010 3.990 14 N -0.947 5.947 15 Si 0.939 3.061 16 H -0.272 1.272 17 H -0.241 1.241 18 H -0.284 1.284 19 C 0.068 3.932 20 O -0.325 6.325 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.156 0.844 25 H 0.168 0.832 26 H 0.141 0.859 27 H 0.043 0.957 28 H 0.012 0.988 29 H 0.266 0.734 30 H 0.070 0.930 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 16.317 -3.272 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 C -0.168 4.168 4 C -0.097 4.097 5 C -0.174 4.174 6 C 0.032 3.968 7 C -0.185 4.185 8 C -0.079 4.079 9 H 0.097 0.903 10 C -0.032 4.032 11 C -0.566 4.566 12 H 0.060 0.940 13 C -0.187 4.187 14 N -0.587 5.587 15 Si 0.763 3.237 16 H -0.197 1.197 17 H -0.164 1.164 18 H -0.209 1.209 19 C -0.006 4.006 20 O -0.240 6.240 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.174 0.826 25 H 0.185 0.815 26 H 0.159 0.841 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.863 16.091 -3.249 17.431 hybrid contribution -0.641 -0.697 0.553 1.097 sum 5.222 15.394 -2.696 16.477 Atomic orbital electron populations 1.21153 0.90673 1.03919 1.03150 1.19461 0.96816 0.91385 0.97214 1.21311 0.94633 0.97254 1.03634 1.21234 0.94117 0.97544 0.96855 1.20567 1.00937 0.88651 1.07263 1.20053 0.92468 0.86328 0.97992 1.20956 0.94030 0.95657 1.07875 1.21176 0.96199 0.90083 1.00406 0.90307 1.19585 0.94652 0.95197 0.93805 1.21390 1.20262 0.92506 1.22474 0.94033 1.25900 0.97732 0.96839 0.98241 1.70048 1.33891 1.15943 1.38844 0.85818 0.77878 0.80537 0.79481 1.19690 1.16445 1.20933 1.23775 0.83784 0.92803 1.00237 1.86719 1.39932 1.14511 1.82848 0.90465 0.91745 0.89261 0.82600 0.81483 0.84090 0.93935 0.97004 0.92495 0.91196 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.77 71.24 0.70 -3.05 16 2 C -0.05 -1.50 5.86 -19.96 -0.12 -1.62 16 3 C -0.15 -3.59 9.70 22.31 0.22 -3.38 16 4 C -0.08 -1.77 10.02 22.21 0.22 -1.55 16 5 C -0.16 -4.31 10.06 22.45 0.23 -4.09 16 6 C 0.08 2.73 7.04 22.68 0.16 2.89 16 7 C -0.18 -6.78 5.58 -19.53 -0.11 -6.89 16 8 C -0.06 -2.49 3.08 -10.65 -0.03 -2.53 16 9 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 10 C 0.00 0.21 2.87 29.85 0.09 0.30 16 11 C -0.53 -29.51 9.14 25.60 0.23 -29.27 16 12 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 13 C 0.01 0.59 5.47 84.66 0.46 1.05 16 14 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 15 Si 0.94 43.36 27.47 68.60 1.88 45.24 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 17 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 C 0.07 2.76 6.75 72.56 0.49 3.25 16 20 O -0.33 -12.61 11.10 -95.02 -1.05 -13.66 16 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.06 2.17 4.50 -2.39 -0.01 2.16 16 23 H 0.09 1.95 8.04 -2.39 -0.02 1.94 16 24 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 25 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 26 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 27 H 0.04 1.91 4.36 -2.39 -0.01 1.90 16 28 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 29 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.07 2.94 7.92 -2.39 -0.02 2.92 16 31 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 Total: -1.00 -65.37 255.66 4.73 -60.65 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.07 Total: 10.75 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 2.53 Total: -44.88 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.30 Total: -58.10 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.05 Total: -13.66 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Total: -65.37 4.73 -60.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260474080.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.441 kcal (2) G-P(sol) polarization free energy of solvation -65.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds