Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39974 * 125.88572 * 2 1 4 4 C 1.30167 * 109.77043 * 180.18148 * 3 2 1 5 5 C 1.41461 * 108.53220 * 359.57937 * 4 3 2 6 6 C 1.40406 * 133.74809 * 180.26640 * 5 4 3 7 7 C 1.36619 * 118.33785 * 180.02562 * 6 5 4 8 8 C 1.39788 * 119.63521 * 359.97438 * 7 6 5 9 9 N 1.38674 * 119.34961 * 180.02562 * 8 7 6 10 10 C 1.36879 * 119.99681 * 354.24023 * 9 8 7 11 11 H 1.08004 * 120.00405 * 5.02456 * 10 9 8 12 12 C 1.38824 * 120.00310 * 185.01607 * 10 9 8 13 13 N 1.31551 * 120.00466 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99661 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47278 * 89.99590 * 14 12 10 16 16 H 1.48497 * 109.47249 * 210.00006 * 14 12 10 17 17 H 1.48508 * 109.47231 * 329.99601 * 14 12 10 18 18 N 1.32205 * 121.30527 * 0.02923 * 8 7 6 19 19 C 1.32727 * 121.38441 * 359.94882 * 18 8 7 20 20 H 1.08993 * 109.47017 * 270.28790 * 1 2 3 21 21 H 1.08997 * 109.46867 * 30.28866 * 1 2 3 22 22 H 1.09001 * 109.46772 * 150.28813 * 1 2 3 23 23 H 1.08000 * 125.73520 * 179.84103 * 4 3 2 24 24 H 1.07999 * 120.83292 * 0.02562 * 6 5 4 25 25 H 1.07998 * 120.18487 * 180.02562 * 7 6 5 26 26 H 0.96997 * 119.99847 * 174.24770 * 9 8 7 27 27 H 0.96997 * 120.00321 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2855 1.1341 0.0000 4 6 3.5360 0.7727 -0.0039 5 6 3.5957 -0.6406 0.0032 6 6 4.6501 -1.5678 0.0079 7 6 4.3429 -2.8990 0.0140 8 6 3.0036 -3.2994 0.0159 9 7 2.6986 -4.6521 0.0227 10 6 3.6986 -5.5797 -0.0916 11 1 4.7309 -5.2621 -0.1054 12 6 3.3863 -6.9288 -0.1897 13 7 4.3474 -7.8203 -0.2991 14 14 1.6010 -7.4781 -0.1665 15 1 1.0747 -7.5099 -1.5546 16 1 1.5084 -8.8352 0.4292 17 1 0.8006 -6.5259 0.6447 18 7 2.0219 -2.4139 0.0114 19 6 2.2676 -1.1096 0.0058 20 1 -0.3633 0.0052 1.0276 21 1 -0.3633 0.8874 -0.5183 22 1 -0.3633 -0.8926 -0.5094 23 1 4.3854 1.4399 -0.0073 24 1 5.6781 -1.2370 0.0067 25 1 5.1305 -3.6380 0.0181 26 1 1.7766 -4.9410 0.1083 27 1 4.1291 -8.7630 -0.3673 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595405.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = 114.237588 kcal Electronic energy + Delta-G solvation = -13860.847525 eV Core-core repulsion = 11427.656264 eV Total energy + Delta-G solvation = -2433.191260 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72600 -37.91029 -34.85431 -33.15882 -32.10580 -30.83774 -28.23817 -26.22838 -24.77745 -22.62797 -21.14526 -20.16842 -18.53275 -16.96908 -16.39325 -15.76320 -15.11687 -14.94742 -13.87671 -13.47912 -13.33178 -13.13409 -12.60200 -12.45035 -12.16712 -12.09034 -11.81084 -11.35086 -10.75672 -10.39030 -10.19105 -10.04574 -9.76544 -8.91021 -8.49697 -7.72310 -7.17384 -6.67703 -3.99671 1.72772 2.37927 2.85418 2.95726 2.99181 3.03317 3.26236 3.87092 4.39375 4.55105 4.95385 5.05722 5.27571 5.48328 5.57005 5.74668 5.85902 5.91039 6.18870 6.22475 6.56893 6.95878 6.99782 7.21686 7.37532 7.59272 7.75234 8.23367 8.34416 8.66984 9.01486 9.34141 10.41777 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.046491 B = 0.007870 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.119948 B = 3557.180366 C = 4141.642318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.412 5.412 3 N -0.297 5.297 4 C 0.096 3.904 5 C -0.326 4.326 6 C 0.017 3.983 7 C -0.239 4.239 8 C 0.417 3.583 9 N -0.544 5.544 10 C -0.308 4.308 11 H 0.125 0.875 12 C 0.048 3.952 13 N -0.862 5.862 14 Si 0.884 3.116 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.264 1.264 18 N -0.617 5.617 19 C 0.378 3.622 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.180 0.820 24 H 0.123 0.877 25 H 0.137 0.863 26 H 0.384 0.616 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 8.888 0.439 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.206 5.206 3 N -0.112 5.112 4 C -0.098 4.098 5 C -0.341 4.341 6 C -0.010 4.010 7 C -0.264 4.264 8 C 0.166 3.834 9 N -0.154 5.154 10 C -0.438 4.438 11 H 0.142 0.858 12 C -0.159 4.159 13 N -0.497 5.497 14 Si 0.709 3.291 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.190 1.190 18 N -0.351 5.351 19 C 0.134 3.866 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.100 0.900 23 H 0.196 0.804 24 H 0.141 0.859 25 H 0.154 0.846 26 H 0.220 0.780 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.605 9.083 0.399 10.191 hybrid contribution 0.084 -1.041 0.061 1.046 sum -4.521 8.041 0.460 9.237 Atomic orbital electron populations 1.21510 0.75055 1.03237 1.02013 1.47876 1.05095 1.00700 1.66934 1.76622 1.02039 1.07786 1.24751 1.23484 0.94640 0.93751 0.97911 1.18977 0.94544 0.94020 1.26534 1.20311 0.97111 0.91472 0.92078 1.21011 0.96188 0.96167 1.13077 1.17775 0.88233 0.84391 0.92954 1.41147 1.09264 1.01468 1.63518 1.19492 0.89972 0.86215 1.48104 0.85784 1.25027 0.98847 0.95419 0.96584 1.69652 1.32211 1.02405 1.45435 0.86549 0.83565 0.79404 0.79552 1.19104 1.19733 1.18972 1.65847 1.35540 0.98921 1.34795 1.18447 0.87994 0.87054 0.93098 0.92375 0.90569 0.90006 0.80353 0.85898 0.84553 0.78008 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.79 11.48 59.85 0.69 2.48 15 2 N -0.41 -7.77 4.06 -67.21 -0.27 -8.05 15 3 N -0.30 -5.38 12.44 30.85 0.38 -5.00 15 4 C 0.10 1.60 12.05 -17.03 -0.21 1.40 15 5 C -0.33 -6.30 6.19 -106.87 -0.66 -6.96 15 6 C 0.02 0.31 10.17 -39.35 -0.40 -0.09 15 7 C -0.24 -4.95 9.25 -39.59 -0.37 -5.32 15 8 C 0.42 9.48 7.59 -155.26 -1.18 8.30 15 9 N -0.54 -12.70 5.23 -11.12 -0.06 -12.76 15 10 C -0.31 -7.68 10.01 -15.08 -0.15 -7.83 15 11 H 0.12 3.19 5.86 -52.48 -0.31 2.89 15 12 C 0.05 1.21 5.50 -17.45 -0.10 1.11 15 13 N -0.86 -22.70 13.96 55.49 0.77 -21.92 15 14 Si 0.88 18.70 27.79 -169.99 -4.72 13.98 15 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 17 H -0.26 -5.40 6.45 56.52 0.36 -5.04 15 18 N -0.62 -13.91 10.43 -11.53 -0.12 -14.03 15 19 C 0.38 8.01 7.99 -156.06 -1.25 6.76 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.18 2.15 8.06 -52.49 -0.42 1.73 15 24 H 0.12 1.76 8.06 -52.49 -0.42 1.34 15 25 H 0.14 2.78 5.91 -52.49 -0.31 2.47 15 26 H 0.38 8.67 5.86 -40.82 -0.24 8.43 15 27 H 0.28 6.86 8.31 -40.82 -0.34 6.52 15 LS Contribution 241.28 15.07 3.64 3.64 Total: -1.00 -28.75 241.28 -6.14 -34.89 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -2.14 Total: 9.40 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.62 Total: -0.14 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.71 Total: -61.76 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.72 Total: 13.98 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.75 -6.14 -34.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595405.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.124 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds