Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39974 * 125.88572 * 2 1 4 4 C 1.30167 * 109.77043 * 180.18148 * 3 2 1 5 5 C 1.41461 * 108.53220 * 359.57937 * 4 3 2 6 6 C 1.40406 * 133.74809 * 180.26640 * 5 4 3 7 7 C 1.36619 * 118.33785 * 180.02562 * 6 5 4 8 8 C 1.39788 * 119.63521 * 359.97438 * 7 6 5 9 9 N 1.38674 * 119.34961 * 180.02562 * 8 7 6 10 10 C 1.36879 * 119.99681 * 354.24023 * 9 8 7 11 11 H 1.08004 * 120.00405 * 5.02456 * 10 9 8 12 12 C 1.38824 * 120.00310 * 185.01607 * 10 9 8 13 13 N 1.31551 * 120.00466 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99661 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47278 * 89.99590 * 14 12 10 16 16 H 1.48497 * 109.47249 * 210.00006 * 14 12 10 17 17 H 1.48508 * 109.47231 * 329.99601 * 14 12 10 18 18 N 1.32205 * 121.30527 * 0.02923 * 8 7 6 19 19 C 1.32727 * 121.38441 * 359.94882 * 18 8 7 20 20 H 1.08993 * 109.47017 * 270.28790 * 1 2 3 21 21 H 1.08997 * 109.46867 * 30.28866 * 1 2 3 22 22 H 1.09001 * 109.46772 * 150.28813 * 1 2 3 23 23 H 1.08000 * 125.73520 * 179.84103 * 4 3 2 24 24 H 1.07999 * 120.83292 * 0.02562 * 6 5 4 25 25 H 1.07998 * 120.18487 * 180.02562 * 7 6 5 26 26 H 0.96997 * 119.99847 * 174.24770 * 9 8 7 27 27 H 0.96997 * 120.00321 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2855 1.1341 0.0000 4 6 3.5360 0.7727 -0.0039 5 6 3.5957 -0.6406 0.0032 6 6 4.6501 -1.5678 0.0079 7 6 4.3429 -2.8990 0.0140 8 6 3.0036 -3.2994 0.0159 9 7 2.6986 -4.6521 0.0227 10 6 3.6986 -5.5797 -0.0916 11 1 4.7309 -5.2621 -0.1054 12 6 3.3863 -6.9288 -0.1897 13 7 4.3474 -7.8203 -0.2991 14 14 1.6010 -7.4781 -0.1665 15 1 1.0747 -7.5099 -1.5546 16 1 1.5084 -8.8352 0.4292 17 1 0.8006 -6.5259 0.6447 18 7 2.0219 -2.4139 0.0114 19 6 2.2676 -1.1096 0.0058 20 1 -0.3633 0.0052 1.0276 21 1 -0.3633 0.8874 -0.5183 22 1 -0.3633 -0.8926 -0.5094 23 1 4.3854 1.4399 -0.0073 24 1 5.6781 -1.2370 0.0067 25 1 5.1305 -3.6380 0.0181 26 1 1.7766 -4.9410 0.1083 27 1 4.1291 -8.7630 -0.3673 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595405.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = 96.185424 kcal Electronic energy + Delta-G solvation = -13861.630325 eV Core-core repulsion = 11427.656264 eV Total energy + Delta-G solvation = -2433.974061 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.25185 -39.53658 -36.54759 -34.60977 -33.88572 -32.34492 -29.84866 -27.56380 -26.54876 -24.18066 -22.79337 -21.57726 -20.28485 -18.55298 -17.95920 -17.39283 -16.65937 -16.55753 -15.44425 -14.96565 -14.83708 -14.66763 -14.29642 -13.91708 -13.60434 -13.57034 -13.18787 -12.99157 -12.44445 -12.03746 -11.84011 -11.64286 -11.26305 -10.68532 -10.15345 -9.21536 -8.84072 -8.51244 -5.90159 0.20875 0.75877 1.28778 1.31534 1.35852 1.45982 1.82028 2.14157 2.74481 2.81969 3.30747 3.63668 3.76806 4.21064 4.35657 4.45923 4.46487 4.68168 4.69781 4.77832 5.02857 5.31815 5.49089 5.58019 5.80381 5.99797 6.07978 6.55101 6.73372 6.97672 7.22073 7.61716 8.61924 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.046491 B = 0.007870 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.119948 B = 3557.180366 C = 4141.642318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.418 5.418 3 N -0.301 5.301 4 C 0.110 3.890 5 C -0.330 4.330 6 C 0.041 3.959 7 C -0.269 4.269 8 C 0.414 3.586 9 N -0.565 5.565 10 C -0.313 4.313 11 H 0.104 0.896 12 C 0.001 3.999 13 N -0.911 5.911 14 Si 0.943 3.057 15 H -0.265 1.265 16 H -0.269 1.269 17 H -0.255 1.255 18 N -0.630 5.630 19 C 0.344 3.656 20 H 0.071 0.929 21 H 0.101 0.899 22 H 0.079 0.921 23 H 0.230 0.770 24 H 0.170 0.830 25 H 0.132 0.868 26 H 0.384 0.616 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 11.644 0.541 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.211 5.211 3 N -0.115 5.115 4 C -0.084 4.084 5 C -0.344 4.344 6 C 0.015 3.985 7 C -0.294 4.294 8 C 0.165 3.835 9 N -0.178 5.178 10 C -0.443 4.443 11 H 0.121 0.879 12 C -0.201 4.201 13 N -0.549 5.549 14 Si 0.766 3.234 15 H -0.189 1.189 16 H -0.193 1.193 17 H -0.180 1.180 18 N -0.364 5.364 19 C 0.101 3.899 20 H 0.089 0.911 21 H 0.120 0.880 22 H 0.098 0.902 23 H 0.247 0.753 24 H 0.188 0.812 25 H 0.150 0.850 26 H 0.220 0.780 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.035 11.919 0.506 12.948 hybrid contribution 0.219 -1.426 0.036 1.444 sum -4.816 10.492 0.541 11.557 Atomic orbital electron populations 1.21791 0.73051 1.04412 1.03272 1.48321 1.06495 1.00101 1.66196 1.76640 1.02764 1.07627 1.24429 1.24238 0.95457 0.92980 0.95755 1.19456 0.94020 0.95692 1.25195 1.20775 0.99243 0.90015 0.88500 1.21114 0.95343 0.97558 1.15374 1.18163 0.89262 0.84371 0.91726 1.40953 1.08754 1.01454 1.66673 1.19342 0.89600 0.86880 1.48435 0.87867 1.25660 1.02523 0.95311 0.96577 1.69748 1.34057 1.02711 1.48417 0.85630 0.79130 0.79058 0.79560 1.18950 1.19321 1.18010 1.65805 1.35968 0.99867 1.34759 1.18901 0.89857 0.87109 0.94069 0.91074 0.88041 0.90233 0.75346 0.81241 0.84977 0.78001 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.06 11.48 127.77 1.47 4.52 15 2 N -0.42 -14.64 4.06 -366.54 -1.49 -16.13 15 3 N -0.30 -9.70 12.44 -56.30 -0.70 -10.40 15 4 C 0.11 3.13 12.05 85.73 1.03 4.17 15 5 C -0.33 -11.60 6.19 -21.32 -0.13 -11.73 15 6 C 0.04 1.38 10.17 22.42 0.23 1.61 15 7 C -0.27 -10.97 9.25 22.27 0.21 -10.76 15 8 C 0.41 18.89 7.59 133.39 1.01 19.90 15 9 N -0.56 -26.91 5.23 -189.09 -0.99 -27.90 15 10 C -0.31 -16.19 10.01 84.05 0.84 -15.35 15 11 H 0.10 5.61 5.86 -2.91 -0.02 5.59 15 12 C 0.00 0.08 5.50 84.88 0.47 0.54 15 13 N -0.91 -49.92 13.96 21.65 0.30 -49.62 15 14 Si 0.94 39.38 27.79 68.60 1.91 41.29 15 15 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 17 H -0.26 -10.11 6.45 99.48 0.64 -9.47 15 18 N -0.63 -28.03 10.43 -190.40 -1.99 -30.01 15 19 C 0.34 13.89 7.99 134.08 1.07 14.96 15 20 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.23 3.97 8.06 -2.91 -0.02 3.95 15 24 H 0.17 4.00 8.06 -2.91 -0.02 3.98 15 25 H 0.13 5.49 5.91 -2.91 -0.02 5.47 15 26 H 0.38 17.58 5.86 -92.71 -0.54 17.04 15 27 H 0.28 14.35 8.31 -92.71 -0.77 13.58 15 Total: -1.00 -63.02 241.28 3.84 -59.18 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.60 Total: 25.73 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.19 Total: 7.86 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -4.86 Total: -134.05 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.91 Total: 41.29 kcal Total: -63.02 3.84 -59.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595405.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.364 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds