Wall clock time and date at job start Mon Mar 30 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47152 * 2 1 4 4 C 1.50696 * 109.47052 * 239.99792 * 2 1 3 5 5 H 1.08004 * 119.99990 * 240.00072 * 4 2 1 6 6 C 1.37879 * 120.00192 * 60.00373 * 4 2 1 7 7 N 1.31513 * 119.99410 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00139 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47108 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47356 * 119.99589 * 8 6 4 11 11 H 1.48500 * 109.47136 * 239.99640 * 8 6 4 12 12 C 1.50699 * 109.47056 * 119.99392 * 2 1 3 13 13 N 1.30259 * 124.94198 * 215.01999 * 12 2 1 14 14 C 1.35235 * 109.51277 * 179.97438 * 13 12 2 15 15 C 1.39942 * 134.90005 * 180.02562 * 14 13 12 16 16 C 1.37125 * 117.64359 * 179.97438 * 15 14 13 17 17 N 1.32205 * 120.44457 * 0.02562 * 16 15 14 18 18 N 1.28511 * 122.89532 * 359.97438 * 17 16 15 19 19 C 1.32206 * 121.63211 * 0.02562 * 18 17 16 20 20 N 1.36024 * 124.93429 * 35.00455 * 12 2 1 21 21 H 0.96995 * 126.27597 * 0.05224 * 20 12 2 22 22 H 1.08995 * 109.47531 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47094 * 300.00682 * 1 2 3 24 24 H 1.09002 * 109.46797 * 59.99694 * 1 2 3 25 25 H 0.97010 * 119.99313 * 180.02562 * 7 6 4 26 26 H 1.08005 * 121.17318 * 0.27625 * 15 14 13 27 27 H 1.07997 * 119.77426 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1472 -0.1859 -4.8160 12 6 2.0323 -0.7103 1.2305 13 7 3.1054 -0.3855 1.8936 14 6 3.2618 -1.2275 2.9402 15 6 4.2016 -1.3613 3.9685 16 6 4.0140 -2.3738 4.8741 17 7 2.9769 -3.1864 4.7650 18 7 2.1029 -3.0808 3.8289 19 6 2.1880 -2.1403 2.9036 20 7 1.4308 -1.7836 1.8105 21 1 0.6179 -2.2184 1.5088 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7082 1.1608 -3.4845 26 1 5.0422 -0.6879 4.0488 27 1 4.7182 -2.5082 5.6817 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627475.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:20 Heat of formation + Delta-G solvation = 77.380591 kcal Electronic energy + Delta-G solvation = -13970.972572 eV Core-core repulsion = 11536.183072 eV Total energy + Delta-G solvation = -2434.789500 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.65112 -40.46939 -36.37952 -34.91829 -33.20886 -32.60916 -31.08671 -27.37351 -25.89291 -24.90562 -23.50371 -21.69868 -19.94348 -18.90371 -18.27942 -17.43383 -16.99418 -16.79579 -15.69099 -15.06837 -14.92891 -14.73134 -14.34176 -13.57698 -12.94683 -12.82420 -12.63676 -12.47615 -12.43080 -12.30085 -12.03514 -11.70175 -11.29187 -10.58272 -10.54276 -10.24037 -9.81912 -8.21922 -6.37870 -0.64379 0.09608 1.39916 1.41736 1.44964 1.53970 1.65509 2.39535 2.60673 2.86843 3.06495 3.13153 3.51666 3.76230 3.97403 4.34803 4.47956 4.63251 4.76501 4.87778 4.94251 5.08103 5.28561 5.42390 5.62805 5.83840 6.05779 6.17153 6.64102 6.65612 7.31554 7.60376 8.83089 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.049490 B = 0.007374 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.632769 B = 3796.338522 C = 3925.223643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.109 3.891 3 H 0.046 0.954 4 C -0.533 4.533 5 H 0.047 0.953 6 C 0.032 3.968 7 N -0.903 5.903 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.377 3.623 13 N -0.536 5.536 14 C 0.030 3.970 15 C -0.069 4.069 16 C 0.025 3.975 17 N -0.245 5.245 18 N -0.243 5.243 19 C 0.154 3.846 20 N -0.571 5.571 21 H 0.439 0.561 22 H 0.045 0.955 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.269 0.731 26 H 0.184 0.816 27 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 -3.403 8.913 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.088 3.912 3 H 0.064 0.936 4 C -0.572 4.572 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.541 5.541 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.108 3.892 13 N -0.257 5.257 14 C -0.099 4.099 15 C -0.100 4.100 16 C -0.134 4.134 17 N -0.093 5.093 18 N -0.096 5.096 19 C -0.090 4.090 20 N -0.187 5.187 21 H 0.282 0.718 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.202 0.798 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.524 -3.893 9.251 10.350 hybrid contribution 0.091 0.139 -1.539 1.548 sum 2.615 -3.754 7.712 8.967 Atomic orbital electron populations 1.21747 0.94935 1.00710 1.01786 1.17671 0.94465 0.94828 0.84200 0.93596 1.20983 1.32855 1.12983 0.90340 0.93505 1.25526 0.94686 0.95443 1.01324 1.69945 1.36181 1.23097 1.24830 0.85481 0.78313 0.78449 0.79250 1.20099 1.19863 1.20406 1.24999 0.86793 0.83873 0.93518 1.70556 1.18516 1.28658 1.07974 1.20599 0.97153 0.94751 0.97437 1.21716 0.98422 0.99293 0.90558 1.24268 0.97248 0.91571 1.00346 1.72960 1.01361 1.22781 1.12242 1.72651 1.21399 1.16342 0.99201 1.21105 0.95357 0.98691 0.93865 1.42796 1.25649 1.28169 1.22091 0.71841 0.93582 0.94441 0.90116 0.92122 0.79821 0.75672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.70 71.98 0.63 -4.93 15 2 C 0.11 5.08 2.77 -12.29 -0.03 5.05 15 3 H 0.05 2.37 8.14 -2.39 -0.02 2.35 15 4 C -0.53 -27.25 8.55 25.60 0.22 -27.03 15 5 H 0.05 2.47 7.74 -2.91 -0.02 2.45 15 6 C 0.03 1.60 5.30 84.66 0.45 2.05 15 7 N -0.90 -46.98 11.32 21.45 0.24 -46.74 15 8 Si 0.96 40.88 29.54 68.60 2.03 42.90 15 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 12 C 0.38 16.18 6.75 137.88 0.93 17.12 15 13 N -0.54 -23.24 11.27 -179.73 -2.03 -25.27 15 14 C 0.03 1.12 7.31 39.71 0.29 1.41 15 15 C -0.07 -1.87 10.21 22.42 0.23 -1.64 15 16 C 0.02 0.58 11.23 84.37 0.95 1.53 15 17 N -0.24 -7.67 11.48 -58.05 -0.67 -8.34 15 18 N -0.24 -8.82 11.55 -55.12 -0.64 -9.45 15 19 C 0.15 5.83 8.58 134.02 1.15 6.98 15 20 N -0.57 -21.52 5.95 -183.75 -1.09 -22.61 15 21 H 0.44 14.33 8.09 -92.71 -0.75 13.58 15 22 H 0.05 1.73 7.36 -2.39 -0.02 1.71 15 23 H 0.04 1.38 8.14 -2.38 -0.02 1.36 15 24 H 0.08 3.75 6.07 -2.39 -0.01 3.73 15 25 H 0.27 13.26 8.31 -92.70 -0.77 12.49 15 26 H 0.18 3.66 8.06 -2.91 -0.02 3.64 15 27 H 0.23 2.77 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -60.69 241.78 3.11 -57.57 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.46 Total: 11.39 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 4.81 Total: 0.54 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.18 Total: -112.41 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -60.69 3.11 -57.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627475.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.954 kcal (2) G-P(sol) polarization free energy of solvation -60.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds