Wall clock time and date at job start Mon Mar 30 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86794 * 120.00141 * 2 1 4 4 H 1.48507 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47192 * 299.99827 * 3 2 1 6 6 H 1.48499 * 109.47072 * 60.00065 * 3 2 1 7 7 C 1.39951 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99835 * 197.86590 * 7 2 1 9 9 C 1.41391 * 120.00433 * 17.86099 * 7 2 1 10 10 C 1.40721 * 120.24434 * 24.37092 * 9 7 2 11 11 C 1.37615 * 119.74613 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24672 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74928 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46642 * 25.00709 * 13 12 11 15 15 O 1.42898 * 109.47143 * 145.00375 * 13 12 11 16 16 C 1.52995 * 109.47376 * 265.00739 * 13 12 11 17 17 C 1.52999 * 117.49974 * 179.97438 * 16 13 12 18 18 C 1.52993 * 60.03448 * 252.49810 * 17 16 13 19 19 C 1.38629 * 120.50562 * 0.25807 * 12 11 10 20 20 C 1.37624 * 120.24583 * 359.44413 * 19 12 11 21 21 H 0.97001 * 119.99991 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.12489 * 0.05158 * 10 9 7 23 23 H 1.07997 * 119.87423 * 180.02562 * 11 10 9 24 24 H 0.96698 * 114.00116 * 60.00641 * 15 13 12 25 25 H 1.08999 * 115.56224 * 325.68550 * 16 13 12 26 26 H 1.09006 * 117.49931 * 359.97438 * 17 16 13 27 27 H 1.08999 * 117.50516 * 144.99348 * 17 16 13 28 28 H 1.09003 * 117.50702 * 107.49882 * 18 17 16 29 29 H 1.09010 * 117.50167 * 252.52425 * 18 17 16 30 30 H 1.08001 * 119.88350 * 179.69754 * 19 12 11 31 31 H 1.07998 * 120.13093 * 180.27766 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3462 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3963 1.2125 7 6 2.0079 -1.2121 -0.0005 8 1 3.0488 -1.2348 0.2864 9 6 1.3521 -2.4069 -0.3766 10 6 0.2207 -2.3616 -1.2122 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0649 -4.7498 -1.1129 13 6 -0.6348 -6.0233 -1.5128 14 1 -1.1615 -5.8680 -2.4544 15 8 0.3289 -7.0663 -1.6724 16 6 -1.6375 -6.4171 -0.4264 17 6 -2.4547 -7.6915 -0.6478 18 6 -3.1261 -6.3222 -0.7700 19 6 1.1751 -4.8060 -0.2846 20 6 1.8253 -3.6500 0.0825 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1510 -1.4130 -1.5704 23 1 -1.2783 -3.4985 -2.2129 24 1 0.8362 -7.2589 -0.8721 25 1 -1.3410 -6.1803 0.5954 26 1 -2.2783 -8.2491 -1.5676 27 1 -2.6954 -8.2936 0.2283 28 1 -3.3912 -5.9789 -1.7701 29 1 -3.8083 -6.0231 0.0259 30 1 1.5337 -5.7608 0.0707 31 1 2.6927 -3.6962 0.7243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260755518.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:01 Heat of formation + Delta-G solvation = -35.206004 kcal Electronic energy + Delta-G solvation = -14070.874617 eV Core-core repulsion = 11702.450588 eV Total energy + Delta-G solvation = -2368.424029 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20789 -38.44091 -36.35798 -35.39794 -32.13045 -31.08915 -28.58975 -25.72712 -23.24861 -22.91842 -22.29819 -21.40789 -19.25134 -17.89102 -17.15534 -17.01686 -15.94050 -15.70855 -15.28336 -14.79757 -14.36713 -14.03591 -13.83008 -13.54275 -13.33463 -12.82145 -12.59411 -12.45820 -12.34178 -11.93418 -11.73518 -11.42316 -11.29064 -11.03056 -11.01313 -10.64036 -9.38135 -9.21840 -8.65772 -6.34842 0.91999 1.12341 1.37292 1.48554 1.52743 2.19852 2.67397 2.90624 3.61230 3.71191 3.87499 4.04206 4.16008 4.36220 4.43083 4.53862 4.63224 4.79958 4.81137 5.02491 5.04044 5.14719 5.26839 5.31028 5.36808 5.46790 5.68644 5.92940 6.08779 6.18754 6.36543 6.68543 6.86966 6.92670 7.01778 8.31609 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.054334 B = 0.006709 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.206369 B = 4172.511663 C = 4471.811340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.076 3.924 10 C -0.190 4.190 11 C -0.097 4.097 12 C -0.230 4.230 13 C 0.205 3.795 14 H 0.089 0.911 15 O -0.568 6.568 16 C -0.195 4.195 17 C -0.154 4.154 18 C -0.175 4.175 19 C -0.083 4.083 20 C -0.242 4.242 21 H 0.288 0.712 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.381 0.619 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -7.413 -0.506 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.209 4.209 11 C -0.116 4.116 12 C -0.232 4.232 13 C 0.146 3.854 14 H 0.107 0.893 15 O -0.375 6.375 16 C -0.214 4.214 17 C -0.190 4.190 18 C -0.212 4.212 19 C -0.101 4.101 20 C -0.262 4.262 21 H 0.099 0.901 22 H 0.118 0.882 23 H 0.123 0.877 24 H 0.231 0.769 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.747 -7.271 -1.090 8.252 hybrid contribution 0.507 1.133 0.752 1.451 sum -3.240 -6.138 -0.338 6.949 Atomic orbital electron populations 1.69883 1.09030 1.30496 1.35716 1.26772 0.95500 1.04560 0.91183 0.85155 0.79389 0.76141 0.78987 1.18230 1.18856 1.18947 1.19865 0.98338 0.92644 1.42231 0.90771 1.18014 0.92019 0.93225 0.89356 1.21270 1.00272 0.97049 1.02339 1.20721 0.98643 0.92568 0.99623 1.20021 1.01099 0.94866 1.07174 1.19888 0.86575 0.82803 0.96113 0.89333 1.86475 1.54084 1.55948 1.40996 1.22994 0.93909 1.04444 1.00038 1.22913 1.02162 0.90065 1.03902 1.23004 0.93871 1.01113 1.03211 1.20556 0.95317 0.97078 0.97150 1.21168 1.04355 0.93217 1.07444 0.90137 0.88210 0.87650 0.76945 0.88910 0.88329 0.87500 0.88551 0.88213 0.86032 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.74 10.95 21.83 0.24 -43.50 16 2 C 0.03 1.77 5.14 85.26 0.44 2.21 16 3 Si 0.98 38.63 29.59 68.60 2.03 40.66 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.60 9.05 23.46 0.21 -27.39 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.20 5.58 -21.29 -0.12 4.08 16 10 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 11 C -0.10 -4.55 9.65 22.22 0.21 -4.33 16 12 C -0.23 -9.69 5.01 -19.68 -0.10 -9.79 16 13 C 0.20 6.94 3.40 29.85 0.10 7.04 16 14 H 0.09 2.98 7.81 -2.39 -0.02 2.96 16 15 O -0.57 -18.20 13.04 -148.98 -1.94 -20.14 16 16 C -0.20 -5.74 5.35 -10.77 -0.06 -5.80 16 17 C -0.15 -3.55 10.15 30.59 0.31 -3.24 16 18 C -0.17 -4.43 10.18 30.62 0.31 -4.12 16 19 C -0.08 -3.56 9.30 22.22 0.21 -3.35 16 20 C -0.24 -12.01 9.80 22.73 0.22 -11.78 16 21 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 22 H 0.10 5.61 6.16 -2.91 -0.02 5.60 16 23 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 24 H 0.38 10.04 7.37 -74.06 -0.55 9.50 16 25 H 0.09 2.93 8.11 -2.39 -0.02 2.91 16 26 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 2.36 8.05 -2.39 -0.02 2.34 16 29 H 0.10 2.34 8.14 -2.38 -0.02 2.33 16 30 H 0.12 4.22 6.60 -2.91 -0.02 4.20 16 31 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -60.13 267.05 2.85 -57.28 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.58 Total: 32.18 kcal Atomic # 6 Polarization: -68.42 SS G_CDS: 1.94 Total: -66.48 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.24 Total: -43.50 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.94 Total: -20.14 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -60.13 2.85 -57.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260755518.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.076 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds