Wall clock time and date at job start Mon Mar 30 2020 02:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47081 * 240.00331 * 3 2 1 5 5 H 1.48497 * 109.46915 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46912 * 120.00427 * 3 2 1 7 7 C 1.39943 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00371 * 195.01208 * 7 2 1 9 9 C 1.41400 * 120.00183 * 15.00627 * 7 2 1 10 10 C 1.40739 * 120.24222 * 25.76628 * 9 7 2 11 11 C 1.37593 * 119.74408 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25093 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.49797 * 359.97438 * 12 11 10 14 14 C 1.37637 * 120.25033 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.12835 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.47454 * 144.97236 * 15 14 13 17 17 O 1.42904 * 109.47113 * 24.97314 * 15 14 13 18 18 C 1.53004 * 109.47220 * 264.97718 * 15 14 13 19 19 C 1.52997 * 117.49676 * 248.62460 * 18 15 14 20 20 C 1.52996 * 117.50043 * 180.02562 * 18 15 14 21 21 H 0.96997 * 119.99603 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.12544 * 359.97438 * 10 9 7 23 23 H 1.07999 * 119.87197 * 180.02562 * 11 10 9 24 24 H 1.07993 * 119.74979 * 179.71980 * 12 11 10 25 25 H 1.08007 * 119.87070 * 180.02562 * 13 12 11 26 26 H 0.96703 * 114.00023 * 300.00157 * 17 15 14 27 27 H 1.09000 * 115.54597 * 34.32629 * 18 15 14 28 28 H 1.08999 * 117.49990 * 359.97438 * 19 18 15 29 29 H 1.08999 * 117.49854 * 145.02313 * 19 18 15 30 30 H 1.09004 * 117.49736 * 214.97882 * 20 18 15 31 31 H 1.09002 * 117.49996 * 359.97053 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0603 -1.2281 0.2417 9 6 1.3372 -2.4155 -0.3181 10 6 0.1873 -2.3933 -1.1293 11 6 -0.4577 -3.5705 -1.4315 12 6 0.0213 -4.7755 -0.9406 13 6 1.1535 -4.8093 -0.1416 14 6 1.8149 -3.6441 0.1736 15 6 3.0458 -3.6841 1.0419 16 1 3.7480 -2.9184 0.7124 17 8 3.6603 -4.9702 0.9383 18 6 2.6522 -3.4229 2.4972 19 6 3.1097 -2.1059 3.1272 20 6 3.7697 -3.4218 3.5421 21 1 -0.4849 0.8401 0.0004 22 1 -0.1878 -1.4558 -1.5125 23 1 -1.3401 -3.5559 -2.0542 24 1 -0.4939 -5.6942 -1.1791 25 1 1.5181 -5.7537 0.2350 26 1 3.0915 -5.7014 1.2157 27 1 1.6809 -3.8149 2.7990 28 1 3.6916 -1.4257 2.5051 29 1 2.4395 -1.6311 3.8438 30 1 3.5338 -3.8132 4.5317 31 1 4.7854 -3.6077 3.1929 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:06 Heat of formation + Delta-G solvation = -30.873641 kcal Electronic energy + Delta-G solvation = -14637.052586 eV Core-core repulsion = 12268.816422 eV Total energy + Delta-G solvation = -2368.236163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26230 -38.23605 -36.31469 -35.41280 -32.17923 -31.10791 -27.66661 -26.53966 -23.16404 -22.77597 -22.25629 -21.21647 -19.21460 -17.70063 -17.37582 -16.67618 -16.03063 -15.76573 -15.24138 -14.74544 -14.40918 -14.07350 -13.69960 -13.46106 -13.06626 -12.80287 -12.64294 -12.38138 -12.16387 -12.09731 -11.55834 -11.36929 -11.27417 -11.02678 -10.91820 -10.56335 -9.24882 -9.19243 -8.57398 -6.27522 0.99110 1.12009 1.38649 1.47890 1.54697 2.21311 2.79547 2.98090 3.62597 3.74166 3.98447 4.12612 4.23115 4.45777 4.49036 4.65043 4.70959 4.83064 4.86590 5.02423 5.09393 5.21701 5.33369 5.35730 5.41579 5.54534 5.75482 6.03427 6.14018 6.20970 6.40940 6.72924 6.89759 7.02624 7.08624 8.38471 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.014360 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.641615 B = 1949.416469 C = 2986.941981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.040 3.960 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.475 4.475 8 H 0.077 0.923 9 C 0.091 3.909 10 C -0.193 4.193 11 C -0.117 4.117 12 C -0.242 4.242 13 C -0.093 4.093 14 C -0.231 4.231 15 C 0.208 3.792 16 H 0.079 0.921 17 O -0.569 6.569 18 C -0.178 4.178 19 C -0.169 4.169 20 C -0.153 4.153 21 H 0.284 0.716 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.380 0.620 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -2.893 4.321 6.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.505 4.505 8 H 0.095 0.905 9 C 0.089 3.911 10 C -0.212 4.212 11 C -0.135 4.135 12 C -0.261 4.261 13 C -0.111 4.111 14 C -0.233 4.233 15 C 0.149 3.851 16 H 0.097 0.903 17 O -0.376 6.376 18 C -0.197 4.197 19 C -0.206 4.206 20 C -0.189 4.189 21 H 0.095 0.905 22 H 0.119 0.881 23 H 0.123 0.877 24 H 0.134 0.866 25 H 0.140 0.860 26 H 0.229 0.771 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.979 -2.377 4.125 6.205 hybrid contribution -0.718 0.670 -0.067 0.985 sum 3.261 -1.707 4.058 5.479 Atomic orbital electron populations 1.69877 1.08859 1.30138 1.36621 1.26600 0.95322 1.04006 0.91547 0.85468 0.78996 0.76544 0.80152 1.18806 1.19651 1.17955 1.19623 0.96905 0.91469 1.42490 0.90469 1.17719 0.91799 0.92721 0.88878 1.21368 1.00204 0.96929 1.02742 1.20987 0.99069 0.93417 1.00053 1.20730 1.00926 0.96884 1.07562 1.20631 0.95323 0.96886 0.98224 1.20531 1.02196 0.94010 1.06558 1.19733 0.91004 0.83992 0.90347 0.90331 1.86487 1.44888 1.16521 1.89698 1.22747 0.98913 1.03723 0.94307 1.22781 1.03720 0.90949 1.03146 1.22933 0.97218 0.99971 0.98822 0.90496 0.88134 0.87704 0.86606 0.86035 0.77143 0.89309 0.89759 0.89050 0.87190 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.09 10.88 21.83 0.24 -42.86 16 2 C 0.04 1.96 5.19 85.26 0.44 2.40 16 3 Si 0.97 37.90 29.59 68.60 2.03 39.92 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.48 -24.57 8.47 23.46 0.20 -24.37 16 8 H 0.08 3.85 6.19 -2.91 -0.02 3.84 16 9 C 0.09 4.81 5.57 -21.29 -0.12 4.69 16 10 C -0.19 -10.25 8.69 22.73 0.20 -10.06 16 11 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 12 C -0.24 -10.47 10.05 22.46 0.23 -10.24 16 13 C -0.09 -3.95 9.29 22.22 0.21 -3.75 16 14 C -0.23 -10.81 5.10 -19.41 -0.10 -10.91 16 15 C 0.21 8.45 2.92 29.85 0.09 8.54 16 16 H 0.08 3.48 6.24 -2.39 -0.01 3.47 16 17 O -0.57 -20.56 12.90 -148.98 -1.92 -22.48 16 18 C -0.18 -6.49 5.35 -10.79 -0.06 -6.55 16 19 C -0.17 -5.84 10.17 30.58 0.31 -5.53 16 20 C -0.15 -4.44 10.15 30.58 0.31 -4.13 16 21 H 0.28 13.57 8.30 -92.71 -0.77 12.80 16 22 H 0.10 5.61 6.15 -2.91 -0.02 5.59 16 23 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 24 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 25 H 0.12 4.23 6.40 -2.91 -0.02 4.21 16 26 H 0.38 11.03 7.33 -74.06 -0.54 10.49 16 27 H 0.09 3.36 8.11 -2.39 -0.02 3.34 16 28 H 0.08 3.08 7.89 -2.39 -0.02 3.06 16 29 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -57.62 262.82 2.87 -54.76 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.60 Total: 35.85 kcal Atomic # 6 Polarization: -67.12 SS G_CDS: 1.93 Total: -65.20 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.24 Total: -42.86 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -1.92 Total: -22.48 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.92 kcal Total: -57.62 2.87 -54.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.883 kcal (2) G-P(sol) polarization free energy of solvation -57.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds