Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86803 * 119.99970 * 2 1 4 4 H 1.48496 * 109.46962 * 270.00080 * 3 2 1 5 5 H 1.48500 * 109.46934 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47065 * 149.99884 * 3 2 1 7 7 C 1.39940 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99649 * 195.41699 * 7 2 1 9 9 C 1.41389 * 120.00243 * 15.41570 * 7 2 1 10 10 C 1.40737 * 120.24710 * 25.18597 * 9 7 2 11 11 C 1.37590 * 119.74904 * 179.72113 * 10 9 7 12 12 C 1.38664 * 120.24898 * 0.25864 * 11 10 9 13 13 C 1.38611 * 120.50090 * 359.97438 * 12 11 10 14 14 C 1.37647 * 120.24555 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.12205 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.46741 * 215.00196 * 15 14 13 17 17 O 1.42899 * 109.47668 * 334.99882 * 15 14 13 18 18 C 1.52995 * 109.47178 * 95.00130 * 15 14 13 19 19 C 1.52999 * 117.49867 * 248.61758 * 18 15 14 20 20 C 1.53003 * 60.00240 * 252.50698 * 19 18 15 21 21 H 0.97010 * 119.99986 * 359.97438 * 1 2 3 22 22 H 1.08003 * 120.12201 * 0.02562 * 10 9 7 23 23 H 1.08005 * 119.87767 * 180.23363 * 11 10 9 24 24 H 1.08001 * 119.75098 * 179.97438 * 12 11 10 25 25 H 1.07994 * 119.88024 * 179.97438 * 13 12 11 26 26 H 0.96700 * 113.99910 * 60.00014 * 17 15 14 27 27 H 1.08999 * 115.55156 * 34.32570 * 18 15 14 28 28 H 1.08991 * 117.50015 * 0.02562 * 19 18 15 29 29 H 1.08999 * 117.49738 * 145.02286 * 19 18 15 30 30 H 1.08996 * 117.49939 * 252.50970 * 20 19 18 31 31 H 1.09000 * 117.49422 * 107.48437 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0588 -1.2289 0.2481 9 6 1.3391 -2.4142 -0.3266 10 6 0.1872 -2.3880 -1.1347 11 6 -0.4522 -3.5647 -1.4504 12 6 0.0311 -4.7728 -0.9710 13 6 1.1619 -4.8101 -0.1703 14 6 1.8177 -3.6453 0.1582 15 6 3.0465 -3.6891 1.0295 16 1 3.0700 -2.8068 1.6691 17 8 3.0136 -4.8649 1.8409 18 6 4.2964 -3.7131 0.1475 19 6 5.1240 -4.9998 0.1298 20 6 5.6554 -3.7583 0.8490 21 1 -0.4850 0.8401 0.0004 22 1 -0.1905 -1.4483 -1.5098 23 1 -1.3342 -3.5474 -2.0736 24 1 -0.4774 -5.6915 -1.2234 25 1 1.5294 -5.7565 0.1979 26 1 2.9915 -5.6900 1.3371 27 1 4.2279 -3.1456 -0.7806 28 1 4.7778 -5.8294 0.7461 29 1 5.6000 -5.2791 -0.8102 30 1 6.4809 -3.2210 0.3822 31 1 5.6589 -3.7711 1.9389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = -31.051525 kcal Electronic energy + Delta-G solvation = -14547.173700 eV Core-core repulsion = 12178.929824 eV Total energy + Delta-G solvation = -2368.243877 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39341 -38.43713 -35.94543 -35.42631 -32.30767 -31.11976 -27.73309 -26.70319 -23.25104 -22.74192 -22.19319 -21.02571 -19.25107 -17.87385 -17.29531 -16.92516 -16.08424 -15.81482 -15.12154 -14.67625 -14.43112 -14.27432 -13.52368 -13.42552 -13.03220 -12.81880 -12.67536 -12.38767 -12.28902 -12.04711 -11.56956 -11.42895 -11.35597 -11.07946 -10.96448 -10.48238 -9.26954 -9.18241 -8.60402 -6.32485 0.96955 1.11935 1.37915 1.50246 1.53407 2.20492 2.75731 2.96674 3.56773 3.74016 3.94553 4.09075 4.17191 4.43065 4.51514 4.68306 4.72378 4.80892 4.83394 5.05944 5.07007 5.23092 5.32066 5.33474 5.38054 5.54018 5.73640 6.01928 6.14758 6.20145 6.38929 6.71430 6.84676 7.00060 7.07054 8.35366 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.012540 C = 0.008744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.627605 B = 2232.284713 C = 3201.388842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.487 4.487 8 H 0.082 0.918 9 C 0.087 3.913 10 C -0.192 4.192 11 C -0.117 4.117 12 C -0.240 4.240 13 C -0.090 4.090 14 C -0.229 4.229 15 C 0.206 3.794 16 H 0.078 0.922 17 O -0.568 6.568 18 C -0.189 4.189 19 C -0.163 4.163 20 C -0.170 4.170 21 H 0.286 0.714 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.377 0.623 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -4.493 -0.511 8.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.085 3.915 10 C -0.212 4.212 11 C -0.136 4.136 12 C -0.259 4.259 13 C -0.108 4.108 14 C -0.230 4.230 15 C 0.148 3.852 16 H 0.096 0.904 17 O -0.377 6.377 18 C -0.208 4.208 19 C -0.199 4.199 20 C -0.207 4.207 21 H 0.096 0.904 22 H 0.119 0.881 23 H 0.124 0.876 24 H 0.135 0.865 25 H 0.138 0.862 26 H 0.228 0.772 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.676 -3.904 -0.015 7.734 hybrid contribution -0.246 0.650 -0.606 0.922 sum 6.430 -3.254 -0.621 7.233 Atomic orbital electron populations 1.69893 1.08998 1.30266 1.36328 1.26747 0.95438 1.04488 0.91425 0.85280 0.79235 0.76303 0.79438 1.18788 1.19571 1.17996 1.19810 0.97599 0.91727 1.42514 0.90042 1.17737 0.91834 0.92653 0.89324 1.21373 1.00128 0.96983 1.02692 1.20990 0.99096 0.93370 1.00114 1.20742 1.00924 0.96867 1.07387 1.20595 0.95740 0.96812 0.97656 1.20504 1.02163 0.93889 1.06470 1.19677 0.89505 0.86668 0.89382 0.90382 1.86513 1.96883 1.16510 1.37745 1.22890 0.92479 1.03938 1.01461 1.23000 1.02525 0.91607 1.02811 1.22959 0.96040 1.01953 0.99745 0.90373 0.88121 0.87618 0.86509 0.86176 0.77249 0.89242 0.87542 0.87741 0.87930 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.88 10.86 21.83 0.24 -43.65 16 2 C 0.03 1.68 5.19 85.25 0.44 2.13 16 3 Si 0.98 38.46 29.59 68.60 2.03 40.49 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.49 -25.72 8.16 23.46 0.19 -25.53 16 8 H 0.08 4.13 6.66 -2.91 -0.02 4.11 16 9 C 0.09 4.63 5.57 -21.29 -0.12 4.52 16 10 C -0.19 -10.28 8.69 22.73 0.20 -10.09 16 11 C -0.12 -5.56 10.02 22.22 0.22 -5.33 16 12 C -0.24 -10.40 10.05 22.46 0.23 -10.17 16 13 C -0.09 -3.86 9.29 22.22 0.21 -3.65 16 14 C -0.23 -10.77 5.10 -19.40 -0.10 -10.87 16 15 C 0.21 8.49 2.91 29.85 0.09 8.57 16 16 H 0.08 3.63 7.07 -2.39 -0.02 3.61 16 17 O -0.57 -20.75 12.14 -148.98 -1.81 -22.56 16 18 C -0.19 -6.64 5.34 -10.79 -0.06 -6.70 16 19 C -0.16 -4.35 9.74 30.59 0.30 -4.06 16 20 C -0.17 -4.85 10.19 30.60 0.31 -4.54 16 21 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 22 H 0.10 5.65 6.12 -2.91 -0.02 5.64 16 23 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 24 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 25 H 0.12 4.21 6.40 -2.91 -0.02 4.19 16 26 H 0.38 11.05 5.85 -74.06 -0.43 10.62 16 27 H 0.09 3.51 8.11 -2.39 -0.02 3.49 16 28 H 0.11 2.57 6.38 -2.39 -0.02 2.55 16 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -59.00 259.59 3.07 -55.92 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.71 Total: 35.50 kcal Atomic # 6 Polarization: -67.62 SS G_CDS: 1.91 Total: -65.71 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.24 Total: -43.65 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.81 Total: -22.56 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -59.00 3.07 -55.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.873 kcal (2) G-P(sol) polarization free energy of solvation -58.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds