Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48497 * 109.46988 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47011 * 300.00259 * 3 2 1 6 6 H 1.48506 * 109.46737 * 60.00177 * 3 2 1 7 7 C 1.37871 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46871 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.73527 * 308.41299 * 10 9 7 12 12 C 1.54353 * 110.99421 * 71.94690 * 10 9 7 13 13 C 1.51381 * 105.17212 * 144.63371 * 12 10 9 14 14 C 1.38538 * 130.36456 * 162.83397 * 13 12 10 15 15 C 1.38125 * 120.33764 * 179.97438 * 14 13 12 16 16 C 1.38158 * 119.99657 * 359.97438 * 15 14 13 17 17 C 1.38600 * 119.87283 * 0.02562 * 16 15 14 18 18 O 1.35899 * 119.95466 * 180.02562 * 17 16 15 19 19 C 1.38368 * 109.79215 * 342.83347 * 13 12 10 20 20 C 1.51362 * 109.65520 * 359.96557 * 19 13 12 21 21 H 0.97000 * 120.00390 * 359.97438 * 1 2 3 22 22 H 1.08991 * 109.47320 * 59.99805 * 9 7 2 23 23 H 1.09003 * 109.47057 * 299.99420 * 9 7 2 24 24 H 1.09001 * 110.29832 * 263.55005 * 12 10 9 25 25 H 1.08997 * 110.30839 * 25.70487 * 12 10 9 26 26 H 1.08003 * 119.82895 * 359.94821 * 14 13 12 27 27 H 1.07999 * 120.00413 * 179.97438 * 15 14 13 28 28 H 1.08005 * 120.06834 * 180.02562 * 16 15 14 29 29 H 0.96698 * 114.00002 * 89.99943 * 18 17 16 30 30 H 1.09002 * 110.30672 * 258.25415 * 20 19 13 31 31 H 1.08997 * 110.30205 * 136.19714 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9775 -3.5437 -0.7982 12 6 2.9441 -3.7921 1.3707 13 6 3.1347 -5.2794 1.5786 14 6 3.9642 -5.9643 2.4516 15 6 3.9718 -7.3454 2.4680 16 6 3.1491 -8.0509 1.6111 17 6 2.3176 -7.3700 0.7358 18 8 1.5074 -8.0623 -0.1074 19 6 2.3101 -5.9822 0.7180 20 6 1.5096 -5.0130 -0.1251 21 1 -0.4851 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 3.9094 -3.2861 1.3524 25 1 2.3139 -3.3779 2.1576 26 1 4.6084 -5.4154 3.1226 27 1 4.6209 -7.8738 3.1505 28 1 3.1539 -9.1308 1.6232 29 1 0.6341 -8.2583 0.2587 30 1 0.4932 -4.9274 0.2593 31 1 1.4938 -5.3399 -1.1648 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260887487.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = -57.578010 kcal Electronic energy + Delta-G solvation = -14048.427533 eV Core-core repulsion = 11679.033382 eV Total energy + Delta-G solvation = -2369.394152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.28469 -38.43235 -36.81751 -34.83784 -31.70721 -31.22168 -28.25985 -28.02269 -24.99108 -22.65784 -22.01814 -20.94546 -18.85437 -18.51646 -17.02800 -16.72361 -16.53797 -15.96376 -15.63998 -14.73621 -14.27981 -14.09159 -13.86675 -13.69027 -13.33716 -12.99844 -12.82947 -12.63839 -12.32881 -12.11979 -11.96877 -11.63594 -11.41212 -11.21587 -11.00707 -10.54987 -9.47154 -9.44432 -8.18634 -6.28641 0.34206 0.40008 1.40481 1.41045 1.54066 2.41856 2.70456 3.14799 3.37542 3.54074 3.76196 4.13616 4.16815 4.23688 4.35464 4.64282 4.66814 4.84854 4.90546 4.97839 5.04032 5.16527 5.20585 5.29968 5.46888 5.50891 5.54971 5.70046 5.76525 5.84765 5.98334 6.26554 6.86951 6.87533 7.40321 8.93577 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.051680 B = 0.006435 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.666411 B = 4350.410124 C = 4760.059567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.038 3.962 10 C -0.076 4.076 11 H 0.061 0.939 12 C -0.064 4.064 13 C -0.091 4.091 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.151 4.151 17 C 0.104 3.896 18 O -0.510 6.510 19 C -0.141 4.141 20 C -0.069 4.069 21 H 0.263 0.737 22 H -0.009 1.009 23 H -0.004 1.004 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.405 0.595 30 H 0.070 0.930 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -14.665 5.202 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.001 3.999 10 C -0.094 4.094 11 H 0.080 0.920 12 C -0.101 4.101 13 C -0.091 4.091 14 C -0.144 4.144 15 C -0.117 4.117 16 C -0.170 4.170 17 C 0.060 3.940 18 O -0.322 6.322 19 C -0.141 4.141 20 C -0.106 4.106 21 H 0.072 0.928 22 H 0.010 0.990 23 H 0.014 0.986 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.180 0.820 28 H 0.171 0.829 29 H 0.263 0.737 30 H 0.088 0.912 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.624 -14.531 4.818 16.681 hybrid contribution -0.572 1.138 0.044 1.274 sum 6.052 -13.393 4.862 15.481 Atomic orbital electron populations 1.70100 1.07782 1.27623 1.52049 1.25946 0.95705 1.03234 0.94920 0.85435 0.79144 0.79000 0.77701 1.18580 1.20564 1.20402 1.21649 0.93472 0.91995 1.49879 0.92132 1.18984 0.93629 0.92366 0.94872 1.21808 0.97297 0.93705 0.96604 0.92014 1.20951 1.00732 0.91061 0.97371 1.20901 0.96280 0.95879 0.96028 1.20977 0.99306 0.94977 0.99160 1.21273 0.98638 0.93093 0.98717 1.21552 0.98235 1.01408 0.95769 1.18226 0.95597 0.87732 0.92480 1.84738 1.29796 1.75251 1.42434 1.21124 1.00031 0.93647 0.99307 1.20983 0.98221 0.92645 0.98788 0.92841 0.99034 0.98600 0.90899 0.91312 0.84234 0.82028 0.82931 0.73667 0.91209 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.44 0.28 -56.82 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -30.17 8.83 25.60 0.23 -29.94 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.04 4.33 29.85 0.13 2.17 16 10 C -0.08 -3.25 2.99 -9.88 -0.03 -3.28 16 11 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 12 C -0.06 -2.46 6.05 30.52 0.18 -2.27 16 13 C -0.09 -3.00 6.14 -19.55 -0.12 -3.12 16 14 C -0.13 -3.29 10.03 22.31 0.22 -3.06 16 15 C -0.10 -2.11 10.04 22.22 0.22 -1.88 16 16 C -0.15 -3.44 9.98 22.34 0.22 -3.22 16 17 C 0.10 2.95 6.70 22.49 0.15 3.10 16 18 O -0.51 -12.99 13.45 -92.42 -1.24 -14.23 16 19 C -0.14 -4.73 6.12 -19.49 -0.12 -4.85 16 20 C -0.07 -2.61 6.25 30.52 0.19 -2.42 16 21 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 22 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 23 H 0.00 -0.25 7.94 -2.39 -0.02 -0.27 16 24 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.07 2.80 7.76 -2.39 -0.02 2.78 16 26 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 27 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 28 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.41 6.46 9.06 -74.06 -0.67 5.79 16 30 H 0.07 2.65 7.90 -2.39 -0.02 2.64 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -67.29 265.97 3.27 -64.02 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.45 Total: 8.97 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 1.74 Total: -48.35 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.24 Total: -14.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.29 3.27 -64.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887487.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.444 kcal (2) G-P(sol) polarization free energy of solvation -67.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds