Wall clock time and date at job start Mon Mar 30 2020 02:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38044 * 120.06153 * 99.72708 * 10 9 7 12 12 C 1.38502 * 120.29004 * 179.71639 * 11 10 9 13 13 C 1.38311 * 119.93558 * 0.55510 * 12 11 10 14 14 C 1.38372 * 119.90248 * 359.72132 * 13 12 11 15 15 C 1.38634 * 120.17575 * 0.02562 * 14 13 12 16 16 O 1.35899 * 120.09491 * 180.02562 * 15 14 13 17 17 C 1.51373 * 109.74900 * 179.68765 * 13 12 11 18 18 C 1.54345 * 105.17127 * 17.19780 * 17 13 12 19 19 C 1.51382 * 130.33121 * 180.16313 * 12 11 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08001 * 119.85466 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.91017 * 179.97438 * 14 13 12 25 25 H 0.96705 * 113.99494 * 269.97573 * 16 15 14 26 26 H 1.09003 * 110.30219 * 136.11998 * 17 13 12 27 27 H 1.08998 * 110.30424 * 258.17605 * 17 13 12 28 28 H 1.09005 * 110.81604 * 91.85458 * 18 17 13 29 29 H 1.09007 * 110.82092 * 215.39290 * 18 17 13 30 30 H 1.09004 * 110.29969 * 44.22742 * 19 12 11 31 31 H 1.08997 * 110.38690 * 282.12578 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5260 -4.3067 1.1643 12 6 3.4209 -5.3638 1.1641 13 6 4.0304 -5.7519 -0.0152 14 6 3.7402 -5.0865 -1.1932 15 6 2.8405 -4.0317 -1.1943 16 8 2.5563 -3.3797 -2.3523 17 6 4.9623 -6.9151 0.2494 18 6 4.5296 -7.4755 1.6208 19 6 3.9023 -6.2401 2.3008 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.0544 -4.0016 2.0868 24 1 4.2164 -5.3892 -2.1141 25 1 3.1354 -2.6264 -2.5318 26 1 4.8471 -7.6753 -0.5232 27 1 5.9956 -6.5704 0.2890 28 1 3.7910 -8.2680 1.4999 29 1 5.3926 -7.8312 2.1838 30 1 3.0633 -6.5394 2.9290 31 1 4.6501 -5.7148 2.8947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260920272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:32 Heat of formation + Delta-G solvation = -59.110194 kcal Electronic energy + Delta-G solvation = -14175.307162 eV Core-core repulsion = 11805.846570 eV Total energy + Delta-G solvation = -2369.460592 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.17190 -38.64523 -36.08749 -34.82499 -32.58744 -30.96867 -28.27767 -27.66695 -24.92606 -23.33152 -21.64667 -21.07096 -18.82924 -18.25536 -17.12366 -16.69835 -16.33497 -16.08816 -15.54242 -14.68307 -14.42472 -14.11750 -13.64349 -13.43147 -13.15118 -13.00561 -12.83750 -12.54386 -12.41721 -12.25599 -11.95988 -11.79793 -11.67959 -11.27609 -11.00107 -10.61676 -9.57344 -9.03477 -8.20453 -6.35478 0.39909 0.51584 1.38674 1.41692 1.50015 2.37863 2.75901 3.09609 3.37992 3.70285 3.80698 4.14379 4.26072 4.29505 4.46451 4.52818 4.77392 4.86214 4.95342 5.00396 5.06588 5.17092 5.25579 5.31500 5.39172 5.41977 5.52750 5.69714 5.74304 5.91746 6.04297 6.16618 6.76480 6.96010 7.33123 8.88880 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.007392 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.401280 B = 3787.139773 C = 4005.459899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.067 3.933 10 C -0.096 4.096 11 C -0.116 4.116 12 C -0.114 4.114 13 C -0.110 4.110 14 C -0.136 4.136 15 C 0.083 3.917 16 O -0.506 6.506 17 C -0.073 4.073 18 C -0.111 4.111 19 C -0.080 4.080 20 H 0.265 0.735 21 H -0.003 1.003 22 H 0.000 1.000 23 H 0.112 0.888 24 H 0.141 0.859 25 H 0.397 0.603 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.558 -12.612 1.985 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.097 4.097 11 C -0.134 4.134 12 C -0.114 4.114 13 C -0.110 4.110 14 C -0.154 4.154 15 C 0.039 3.961 16 O -0.317 6.317 17 C -0.110 4.110 18 C -0.148 4.148 19 C -0.117 4.117 20 H 0.074 0.926 21 H 0.015 0.985 22 H 0.018 0.982 23 H 0.130 0.870 24 H 0.158 0.842 25 H 0.254 0.746 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.964 -12.927 1.930 17.060 hybrid contribution -0.093 1.795 -0.146 1.803 sum 10.872 -11.132 1.783 15.662 Atomic orbital electron populations 1.70098 1.07916 1.28038 1.51106 1.25976 0.95732 1.03248 0.94446 0.85444 0.78215 0.77785 0.79259 1.18779 1.20721 1.19359 1.21246 0.92898 0.90900 1.51272 0.92583 1.17892 0.92727 0.91167 0.95222 1.20692 0.98899 0.96760 0.93310 1.20499 0.99595 0.96361 0.96949 1.20963 0.96619 0.96198 0.97647 1.20796 0.99067 0.98963 0.92176 1.20940 0.98414 0.97022 0.99066 1.18343 0.97379 0.95247 0.85153 1.84660 1.61352 1.47989 1.37723 1.21087 0.97645 0.93630 0.98639 1.22321 1.01521 0.96217 0.94723 1.21125 1.00755 0.94836 0.94968 0.92574 0.98494 0.98194 0.87012 0.84161 0.74619 0.89528 0.89012 0.90470 0.87919 0.90303 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.53 -30.48 9.09 25.60 0.23 -30.25 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.07 3.80 4.77 29.10 0.14 3.94 16 10 C -0.10 -4.58 5.08 -19.80 -0.10 -4.68 16 11 C -0.12 -4.81 9.66 22.29 0.22 -4.59 16 12 C -0.11 -3.78 6.14 -19.57 -0.12 -3.90 16 13 C -0.11 -3.36 6.13 -19.60 -0.12 -3.48 16 14 C -0.14 -4.70 9.98 22.40 0.22 -4.48 16 15 C 0.08 3.56 6.67 22.48 0.15 3.71 16 16 O -0.51 -21.63 12.75 -92.42 -1.18 -22.80 16 17 C -0.07 -1.47 6.77 30.52 0.21 -1.27 16 18 C -0.11 -1.88 7.08 31.50 0.22 -1.66 16 19 C -0.08 -1.84 6.77 30.52 0.21 -1.63 16 20 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 21 H 0.00 -0.20 8.01 -2.38 -0.02 -0.22 16 22 H 0.00 -0.01 7.86 -2.39 -0.02 -0.03 16 23 H 0.11 4.59 8.04 -2.91 -0.02 4.57 16 24 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 25 H 0.40 14.33 9.06 -74.05 -0.67 13.66 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -69.75 266.41 3.31 -66.45 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.46 Total: 14.81 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 1.72 Total: -47.59 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.28 Total: -57.29 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.18 Total: -22.80 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.75 3.31 -66.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260920272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.337 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds