Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38282 * 119.82257 * 2 1 4 4 C 1.38351 * 119.76490 * 179.51405 * 3 2 1 5 5 C 1.37734 * 119.98247 * 0.27848 * 4 3 2 6 6 C 1.38886 * 120.77969 * 0.38393 * 5 4 3 7 7 C 1.37937 * 119.82625 * 180.26764 * 2 1 3 8 8 O 1.36144 * 111.22123 * 178.96774 * 6 5 4 9 9 C 1.43775 * 109.19979 * 19.34829 * 8 6 5 10 10 H 1.08994 * 110.75361 * 90.43569 * 9 8 6 11 11 C 1.53004 * 110.74774 * 213.78656 * 9 8 6 12 12 C 1.51650 * 132.17700 * 180.90055 * 5 4 3 13 13 H 1.08992 * 110.93137 * 46.23167 * 12 5 4 14 14 C 1.50699 * 110.93323 * 282.55755 * 12 5 4 15 15 H 1.08005 * 120.00016 * 305.03925 * 14 12 5 16 16 C 1.37873 * 119.99964 * 125.03464 * 14 12 5 17 17 N 1.31518 * 120.00146 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00299 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46727 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47456 * 120.00020 * 18 16 14 21 21 H 1.48497 * 109.47498 * 240.00743 * 18 16 14 22 22 H 1.08991 * 109.47082 * 89.99318 * 1 2 3 23 23 H 1.09003 * 109.46503 * 209.99709 * 1 2 3 24 24 H 1.09001 * 109.47116 * 329.99337 * 1 2 3 25 25 H 1.07998 * 120.12096 * 359.79874 * 3 2 1 26 26 H 1.08004 * 120.00951 * 180.29866 * 4 3 2 27 27 H 1.08002 * 119.87809 * 359.97438 * 7 2 1 28 28 H 1.08999 * 109.47029 * 53.71324 * 11 9 8 29 29 H 1.08999 * 109.47099 * 173.71018 * 11 9 8 30 30 H 1.08995 * 109.47309 * 293.71130 * 11 9 8 31 31 H 0.97001 * 119.99855 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1997 0.0000 4 6 3.5782 1.1983 0.0102 5 6 4.2654 0.0046 0.0145 6 6 3.5859 -1.2066 0.0007 7 6 2.1931 -1.1966 -0.0056 8 8 4.4517 -2.2572 -0.0149 9 6 5.7422 -1.8131 0.4373 10 1 5.8335 -1.9281 1.5173 11 6 6.8593 -2.5681 -0.2859 12 6 5.7470 -0.3173 0.0428 13 1 6.2614 0.2820 0.7941 14 6 6.3668 -0.1209 -1.3167 15 1 5.9566 -0.6307 -2.1759 16 6 7.4574 0.7097 -1.4636 17 7 7.9572 1.3303 -0.4173 18 14 8.2262 0.9527 -3.1487 19 1 7.4833 0.1487 -4.1522 20 1 8.1615 2.3891 -3.5199 21 1 9.6443 0.5138 -3.1138 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6539 2.1344 -0.0033 26 1 4.1193 2.1330 0.0151 27 1 1.6483 -2.1292 -0.0095 28 1 6.7172 -2.4826 -1.3632 29 1 7.8236 -2.1403 -0.0116 30 1 6.8330 -3.6191 0.0017 31 1 8.7247 1.9143 -0.5207 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260944613.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = -36.593866 kcal Electronic energy + Delta-G solvation = -14570.832889 eV Core-core repulsion = 12202.348678 eV Total energy + Delta-G solvation = -2368.484211 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.86163 -38.60023 -35.58137 -33.44925 -32.77993 -30.85923 -29.26950 -27.13833 -25.36398 -23.38225 -21.92180 -21.57386 -18.85554 -17.60776 -17.29693 -16.67383 -16.32688 -15.76906 -15.01079 -14.61732 -14.33890 -14.29260 -13.83081 -13.64003 -13.20019 -12.92975 -12.85902 -12.74848 -12.62843 -12.40697 -12.07766 -11.96658 -11.44784 -11.29067 -11.06889 -10.66695 -9.52621 -8.85240 -8.18479 -6.30365 0.56581 0.58851 1.36135 1.39065 1.50580 2.36512 2.53242 2.92648 3.08228 3.97627 4.09883 4.18453 4.26812 4.33523 4.38653 4.55948 4.72781 4.77158 4.92593 4.94577 4.99386 5.08396 5.18964 5.40813 5.42235 5.49811 5.61627 5.65140 5.71894 5.87170 5.96088 6.15984 6.50874 6.78580 7.33287 8.86147 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.032572 B = 0.009892 C = 0.008491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.427292 B = 2829.884351 C = 3296.755282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.092 4.092 5 C -0.166 4.166 6 C 0.070 3.930 7 C -0.152 4.152 8 O -0.323 6.323 9 C 0.070 3.930 10 H 0.068 0.932 11 C -0.109 4.109 12 C 0.037 3.963 13 H 0.058 0.942 14 C -0.498 4.498 15 H 0.042 0.958 16 C 0.025 3.975 17 N -0.920 5.920 18 Si 0.953 3.047 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.272 1.272 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.149 0.851 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 -2.328 1.129 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.073 4.073 3 C -0.168 4.168 4 C -0.110 4.110 5 C -0.167 4.167 6 C 0.025 3.975 7 C -0.171 4.171 8 O -0.238 6.238 9 C 0.014 3.986 10 H 0.086 0.914 11 C -0.166 4.166 12 C 0.018 3.982 13 H 0.076 0.924 14 C -0.536 4.536 15 H 0.061 0.939 16 C -0.175 4.175 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.197 1.197 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.167 0.833 26 H 0.126 0.874 27 H 0.156 0.844 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.790 -2.444 1.123 10.153 hybrid contribution 1.106 0.457 -0.692 1.382 sum -8.685 -1.987 0.430 8.920 Atomic orbital electron populations 1.20771 0.87678 1.03967 1.03285 1.19908 0.97814 0.91166 0.98401 1.21151 0.92522 0.98880 1.04288 1.20442 0.94774 0.96308 0.99488 1.21688 0.98065 0.94096 1.02850 1.19979 0.92163 0.86851 0.98540 1.20323 0.88845 0.99735 1.08172 1.86660 1.21277 1.33437 1.82422 1.23666 0.81378 0.96650 0.96928 0.91393 1.21470 0.96068 0.98241 1.00859 1.19249 0.88851 0.91882 0.98247 0.92374 1.20828 1.12777 1.27122 0.92878 0.93927 1.25665 0.96995 0.94721 1.00128 1.69992 1.24661 1.30375 1.30845 0.85572 0.78539 0.77990 0.80052 1.19569 1.20454 1.19736 0.90148 0.90454 0.89865 0.83303 0.87415 0.84445 0.92649 0.91611 0.91666 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.00 71.24 0.71 -1.33 16 2 C -0.07 -2.27 5.87 -19.92 -0.12 -2.38 16 3 C -0.15 -5.08 9.71 22.31 0.22 -4.87 16 4 C -0.09 -3.94 10.03 22.18 0.22 -3.71 16 5 C -0.17 -8.00 5.61 -19.53 -0.11 -8.10 16 6 C 0.07 3.12 7.03 22.68 0.16 3.28 16 7 C -0.15 -5.51 9.71 22.45 0.22 -5.30 16 8 O -0.32 -14.97 10.81 -95.19 -1.03 -16.00 16 9 C 0.07 3.20 4.16 31.18 0.13 3.33 16 10 H 0.07 2.91 8.14 -2.39 -0.02 2.90 16 11 C -0.11 -4.59 8.78 71.98 0.63 -3.96 16 12 C 0.04 1.91 3.29 -11.40 -0.04 1.87 16 13 H 0.06 3.34 7.02 -2.39 -0.02 3.32 16 14 C -0.50 -27.59 6.44 25.60 0.16 -27.42 16 15 H 0.04 2.44 7.54 -2.91 -0.02 2.42 16 16 C 0.02 1.34 5.46 84.65 0.46 1.80 16 17 N -0.92 -52.40 12.65 21.45 0.27 -52.13 16 18 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 24 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 25 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 26 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.05 2.48 6.87 -2.39 -0.02 2.46 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 31 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -62.44 263.05 5.03 -57.41 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.11 Total: 12.16 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 2.65 Total: -46.79 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.27 Total: -52.13 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.03 Total: -16.00 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -62.44 5.03 -57.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944613.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.817 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds