Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38287 * 119.82211 * 2 1 4 4 C 1.38347 * 119.76161 * 179.91517 * 3 2 1 5 5 C 1.37742 * 119.98335 * 0.25134 * 4 3 2 6 6 C 1.38889 * 120.78335 * 359.66485 * 5 4 3 7 7 C 1.37926 * 119.82256 * 180.24961 * 2 1 3 8 8 O 1.36134 * 111.23449 * 180.69380 * 6 5 4 9 9 C 1.43774 * 109.22817 * 340.90718 * 8 6 5 10 10 H 1.08997 * 110.75266 * 269.45093 * 9 8 6 11 11 C 1.53002 * 110.74777 * 146.28326 * 9 8 6 12 12 C 1.51647 * 132.17802 * 179.07824 * 5 4 3 13 13 H 1.09006 * 110.93607 * 314.02090 * 12 5 4 14 14 C 1.50693 * 110.93790 * 77.70243 * 12 5 4 15 15 H 1.07997 * 120.00459 * 114.43924 * 14 12 5 16 16 C 1.37882 * 119.99940 * 294.44362 * 14 12 5 17 17 N 1.31513 * 120.00094 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99816 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47472 * 89.99551 * 18 16 14 20 20 H 1.48501 * 109.47132 * 209.99922 * 18 16 14 21 21 H 1.48503 * 109.47020 * 329.99353 * 18 16 14 22 22 H 1.08999 * 109.47029 * 89.99672 * 1 2 3 23 23 H 1.08999 * 109.47112 * 210.00099 * 1 2 3 24 24 H 1.09000 * 109.47052 * 329.99900 * 1 2 3 25 25 H 1.07999 * 120.11728 * 0.18847 * 3 2 1 26 26 H 1.08001 * 120.01188 * 180.23366 * 4 3 2 27 27 H 1.08000 * 119.88022 * 0.02562 * 7 2 1 28 28 H 1.08998 * 109.47064 * 69.02264 * 11 9 8 29 29 H 1.08995 * 109.47434 * 189.02660 * 11 9 8 30 30 H 1.08998 * 109.47190 * 309.02675 * 11 9 8 31 31 H 0.96995 * 120.00008 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1997 0.0000 4 6 3.5782 1.1983 0.0018 5 6 4.2653 0.0045 -0.0017 6 6 3.5858 -1.2068 0.0000 7 6 2.1930 -1.1966 -0.0052 8 8 4.4512 -2.2576 0.0113 9 6 5.7454 -1.8099 -0.4263 10 1 5.8458 -1.9156 -1.5065 11 6 6.8564 -2.5743 0.2966 12 6 5.7471 -0.3174 -0.0190 13 1 6.2686 0.2881 -0.7604 14 6 6.3544 -0.1328 1.3477 15 1 6.7429 -0.9848 1.8857 16 6 6.4138 1.1241 1.9116 17 7 5.9402 2.1616 1.2569 18 14 7.1672 1.3530 3.6056 19 1 8.6221 1.6170 3.4688 20 1 6.5173 2.5024 4.2852 21 1 6.9610 0.1216 4.4096 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6538 2.1345 0.0031 26 1 4.1194 2.1329 0.0056 27 1 1.6481 -2.1291 -0.0097 28 1 6.8622 -3.6111 -0.0397 29 1 7.8189 -2.1143 0.0728 30 1 6.6795 -2.5420 1.3716 31 1 5.9823 3.0458 1.6534 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260944614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -14.166661 kcal Electronic energy + Delta-G solvation = -14750.138588 eV Core-core repulsion = 12382.626894 eV Total energy + Delta-G solvation = -2367.511694 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.08126 -36.88770 -33.68055 -31.47119 -31.27036 -29.07677 -27.64546 -25.25299 -23.70676 -21.56417 -20.14664 -19.81781 -16.86566 -15.76835 -15.63686 -14.68409 -14.50573 -14.10813 -13.27876 -13.00917 -12.85307 -12.46210 -12.28524 -11.84895 -11.67481 -11.30106 -11.18838 -11.05748 -10.88114 -10.65185 -10.27999 -10.24115 -9.71757 -9.31135 -9.12643 -8.55790 -7.65783 -7.00077 -6.10907 -4.18137 2.36012 2.44362 3.25018 3.32189 3.35679 4.24765 4.34271 4.77542 5.19465 5.57374 5.65867 5.78488 5.86956 5.89341 5.97044 5.99524 6.15271 6.23119 6.34483 6.48500 6.57299 6.59808 6.87074 6.94341 7.18803 7.30966 7.39899 7.51017 7.73499 7.84872 7.92206 8.14237 8.32349 8.82474 9.46293 10.93889 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.012286 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.570432 B = 2278.425841 C = 2992.535519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.088 4.088 3 C -0.168 4.168 4 C -0.051 4.051 5 C -0.108 4.108 6 C 0.087 3.913 7 C -0.159 4.159 8 O -0.313 6.313 9 C 0.074 3.926 10 H 0.059 0.941 11 C -0.131 4.131 12 C 0.058 3.942 13 H 0.050 0.950 14 C -0.511 4.511 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.146 0.854 27 H 0.108 0.892 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -3.092 -2.807 6.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.186 4.186 4 C -0.070 4.070 5 C -0.109 4.109 6 C 0.042 3.958 7 C -0.177 4.177 8 O -0.228 6.228 9 C 0.018 3.982 10 H 0.077 0.923 11 C -0.188 4.188 12 C 0.040 3.960 13 H 0.068 0.932 14 C -0.548 4.548 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.723 3.277 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.163 0.837 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.577 -3.133 -2.726 6.180 hybrid contribution 0.395 0.382 1.010 1.150 sum -4.182 -2.751 -1.716 5.292 Atomic orbital electron populations 1.20644 0.92075 1.01802 1.01302 1.19282 0.94849 0.92620 1.02085 1.20879 0.94559 0.96334 1.06825 1.20874 0.92258 0.99221 0.94612 1.21372 0.97697 0.92142 0.99719 1.19643 0.90885 0.87515 0.97799 1.19750 0.90047 0.97422 1.10530 1.86678 1.20479 1.32975 1.82704 1.23414 0.81403 0.96974 0.96377 0.92274 1.21763 0.97233 0.97594 1.02213 1.19074 0.89300 0.89130 0.98493 0.93202 1.21186 1.38506 0.93925 1.01206 0.90869 1.24982 0.94991 0.95944 0.97733 1.69846 1.44997 0.99224 1.37832 0.86528 0.79163 0.77922 0.84074 1.20545 1.21139 1.19832 0.92101 0.92358 0.92173 0.87331 0.83664 0.87366 0.94183 0.90811 0.90740 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.00 36.01 0.36 -1.10 16 2 C -0.09 -1.69 5.87 -104.72 -0.61 -2.30 16 3 C -0.17 -3.43 9.71 -39.52 -0.38 -3.81 16 4 C -0.05 -1.22 9.15 -39.72 -0.36 -1.58 16 5 C -0.11 -2.68 5.31 -104.10 -0.55 -3.24 16 6 C 0.09 2.04 7.04 -38.95 -0.27 1.77 16 7 C -0.16 -3.29 9.71 -39.31 -0.38 -3.67 16 8 O -0.31 -7.32 10.81 -20.17 -0.22 -7.53 16 9 C 0.07 1.61 4.15 -25.83 -0.11 1.50 16 10 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.13 -2.50 8.55 37.16 0.32 -2.18 16 12 C 0.06 1.46 2.90 -91.56 -0.27 1.19 16 13 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.51 -13.56 8.02 -34.44 -0.28 -13.84 16 15 H 0.07 1.90 5.18 -52.49 -0.27 1.63 16 16 C 0.07 1.77 5.35 -17.82 -0.10 1.68 16 17 N -0.88 -23.98 10.35 55.43 0.57 -23.40 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 24 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 25 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 26 H 0.15 3.62 6.27 -52.49 -0.33 3.29 16 27 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.53 6.22 -51.93 -0.32 1.21 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 256.76 15.07 3.87 3.87 Total: -1.00 -28.26 256.76 -7.29 -35.55 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.86 Total: 1.20 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -2.64 Total: -25.59 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 0.57 Total: -23.40 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.22 Total: -7.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.26 -7.29 -35.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260944614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.386 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds